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[177682_at]

Description R03G8.5 /REP_DB=WormBase Gene ID /WP=CE16284 /TR=O17924 /GB=CAA93683.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 02      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 5.2
(-3)
A 		11.4
(-2)
A 		8
(-2.6)
A 		43.8
(3)
A 		39
B 9.6
(3)
A 		8.4
(1.1)
A 		5.8
(-3)
A 		7.3
(-0.6)
A 		4
C 11.3
(-2.8)
A 		10.2
(-2.9)
A 		8.5
(-3)
A 		98.1
(3)
A 		90
avr 8.7
(-2.8) 		10
(-2.6) 		7.4
(-3) 		49.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 33.8
(3)
A 		5.7
(-2.8)
A 		14.8
(-0.9)
A 		4.6
(-3)
A 		6.6
(-2.6)
A 		10.3
(-1.8)
A 		29
B 35.3
(2.1)
A 		14.5
(-1.4)
A 		5.6
(-2.8)
A 		7.4
(-2.5)
A 		40.6
(3)
A 		4.6
(-3)
A 		36
C 7.7
(-2.2)
A 		46.2
(3)
A 		2.6
(-2.9)
A 		38.1
(1.9)
A 		6.5
(-2.4)
A 		2.1
(-3)
A 		44
avr 25.6
(3) 		22.1
(1.9) 		7.7
(-2.4) 		16.7
(0.3) 		17.9
(0.7) 		5.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.9
(-3)
A 		2.5
(-2.2)
A 		2.1
(-2.7)
A 		6.4
(3)
A 		5
B 3.1
(3)
A 		2.1
(-0.3)
A 		1.3
(-3)
A 		1.6
(-2)
A 		2
C 3.7
(-2.6)
A 		2.9
(-3)
A 		3
(-3)
A 		16.5
(3)
A 		14
avr 2.9
(-2.2) 		2.5
(-2.6) 		2.1
(-3) 		8.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 6.2
(3)
A 		2
(-2)
A 		3.2
(-0.6)
A 		1.2
(-3)
A 		2
(-2)
A 		2.5
(-1.4)
A 		5
B 12.3
(1.3)
A 		4.8
(-1.6)
A 		1.4
(-3)
A 		2
(-2.8)
A 		16.5
(3)
A 		1.7
(-2.9)
A 		15
C 2.9
(-2)
A 		14.1
(3)
A 		0.7
(-3)
A 		7.7
(0.1)
A 		2.1
(-2.4)
A 		0.7
(-3)
A 		13
avr 7.1
(3) 		7
(2.9) 		1.8
(-2.8) 		3.6
(-0.8) 		6.9
(2.8) 		1.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17349
Sequence Type Exemplar sequence
Representative Public ID R03G8.5 NCBI
Target Description R03G8.5 /REP_DB=WormBase Gene ID /WP=CE16284 /TR=O17924 /GB=CAA93683.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077770(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077770 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-10) (str-10) mRNA, complete cds. 11/11 None
GENEFINDER00000031819 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13082843:13084033:1 10/11 None
R03G8.5 ENSEMBL cdna:known chromosome:CEL140:X:13082546:13084155:1 gene:R03G8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13082545-13084155(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-10
Ensembl R03G8.5
Entrez Gene 187547 Entrez gene
SwissProt O17924 EMBL-EBI
WormBase CE16284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00869 Hypothetical protein R03G8.5 [Caenorhabditis elegans] emb|CAA93683.1| Hypothetical protein R03G8.5 [Caenorhabditis elegans] ref|NP_510171.1| Seven TM Receptor family member (str-10) [Caenorhabditis elegans] 0.0
blast CAB00869 Hypothetical protein R03G8.5 [Caenorhabditis elegans] emb|CAA93683.1| Hypothetical protein R03G8.5 [Caenorhabditis elegans] ref|NP_510171.1| Seven TM Receptor family member (str-10) [Caenorhabditis elegans] 1.0E-134
blast CAE61380 Hypothetical protein CBG05226 [Caenorhabditis briggsae] 5.0E-93
blast AAC19248 Seven tm receptor protein 13 [Caenorhabditis elegans] ref|NP_503740.1| Seven TM Receptor family member (str-13) [Caenorhabditis elegans] 4.0E-80
blast CAE61380 Hypothetical protein CBG05226 [Caenorhabditis briggsae] 1.0E-77
blast CAE61125 Hypothetical protein CBG04884 [Caenorhabditis briggsae] 7.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510171.1 7 15-37,44-66,86-108,121-143,194-216,244-266,276-298
R03G8.5 7 15-37,44-66,86-108,121-143,194-216,244-266,276-298
GENEFINDER00000031819 5 26-48,61-83,134-156,184-206,216-238
Sequence
Target Sequence 
>C. ELEGANS:177682_AT
aagaaattatgctccgctttaacgccagtattgatgatttaccagcactttctctggtag
ctttcgatccgagcaacggcagtataagatggtggaacgtgatgactatcgttaacatgt
cttttattatgagtatccaatacggaataatcatttattgtggatggtccatgtattcta
aaatggaggaaaaaatcaaaaactattcaatagtacttcaaaaacatcacaatcagcttt
tcaaaactttagtgcttcagataatagctcccactgtttttctcctcacacccctctcat
tcatcatctatcttccattttttaatattaagtgtagcctaccaacgggtgttctgcttt
cgttatttactttatatccaactgctgattcagttgttgtgatatatgtggtaacggaat
accgacaaaaattgaaacttctcacagattgctttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAATTATGCTCCGCTTTAACGC 204 153 494 Antisense
CTCCGCTTTAACGCCAGTATTGATG 152 233 505 Antisense
TTGATGATTTACCAGCACTTTCTCT 261 705 524 Antisense
CACTTTCTCTGGTAGCTTTCGATCC 250 197 539 Antisense
AGCTTTCGATCCGAGCAACGGCAGT 504 79 552 Antisense
AACATCACAATCAGCTTTTCAAAAC 655 133 716 Antisense
AGATAATAGCTCCCACTGTTTTTCT 244 67 752 Antisense
TGTAGCCTACCAACGGGTGTTCTGC 510 557 826 Antisense
GGTGTTCTGCTTTCGTTATTTACTT 91 501 841 Antisense
ACTTTATATCCAACTGCTGATTCAG 388 103 862 Antisense
GAAACTTCTCACAGATTGCTTTATC 301 357 927 Antisense
Sequence Source Affymetrix Proprietary Database