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[177681_s_at]

Description ZK896.5 /REP_DB=WormBase Gene ID /WP=CE28276 /TR=Q9XUA8 /GB=CAB05320.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_high_8_8 > 57      6grp_highest_nonorm > 71      6grp_total > 08      4grp_total > 62      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 571
1 2 3 4 range
A 644.3
(3)
P 		273.5
(-1.4)
P 		406.2
(0.2)
P 		139
(-3)
A 		505
B 420.9
(2.7)
P 		275.2
(0.3)
P 		440.2
(3)
P 		73.2
(-3)
A 		367
C 559.9
(3)
P 		204.5
(-2.1)
P 		482.4
(1.9)
P 		145.7
(-3)
P 		414
avr 541.7
(3) 		251.1
(-1.1) 		442.9
(1.6) 		119.3
(-3) 		422

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 447.6
(3)
P 		249.8
(-2.5)
P 		374
(1)
P 		261.8
(-2.1)
P 		257.8
(-2.2)
P 		230.5
(-3)
P 		217
B 442.3
(3)
P 		322.3
(-0.7)
P 		359.5
(0.5)
P 		280.7
(-1.9)
P 		246.4
(-3)
P 		394.9
(1.5)
P 		196
C 394.4
(2.7)
P 		318.6
(-0.1)
P 		311.7
(-0.4)
P 		386.1
(2.4)
P 		241.4
(-3)
P 		401.5
(3)
P 		160
avr 428.1
(3) 		296.9
(-1.4) 		348.4
(0.3) 		309.5
(-1) 		248.5
(-3) 		342.3
(0.1) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 234.6
(3)
P 		59.4
(-1.9)
P 		106.2
(-0.6)
P 		20.3
(-3)
A 		214
B 134.2
(3)
P 		68
(-0.3)
P 		102
(1.4)
P 		15.6
(-3)
A 		119
C 185.3
(3)
P 		58.8
(-1.7)
P 		168.1
(2.4)
P 		24.6
(-3)
P 		161
avr 184.7
(3) 		62.1
(-1.5) 		125.4
(0.8) 		20.2
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 82.5
(1.8)
P 		88.8
(3)
P 		81.4
(1.6)
P 		66.4
(-1.1)
P 		77.8
(1)
P 		56.1
(-3)
P 		33
B 153.9
(3)
P 		107.3
(-0.5)
P 		87.3
(-2)
P 		74.4
(-3)
P 		100.1
(-1.1)
P 		147.3
(2.5)
P 		80
C 146.2
(3)
P 		97.2
(-1.3)
P 		79.3
(-2.9)
P 		77.6
(-3)
P 		78.1
(-3)
P 		134.4
(2)
P 		69
avr 127.5
(3) 		97.8
(-0.3) 		82.7
(-1.9) 		72.8
(-3) 		85.3
(-1.6) 		112.6
(1.4) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177681_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10148
Sequence Type Exemplar sequence
Representative Public ID ZK896.5 NCBI
Target Description ZK896.5 /REP_DB=WormBase Gene ID /WP=CE28276 /TR=Q9XUA8 /GB=CAB05320.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070052 NCBI Caenorhabditis elegans ZK896.5 (ZK896.5) mRNA, complete cds. 11/11 None
SNAP00000024388 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12876974:12878889:-1 11/11 None
GENEFINDER00000024396 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12876974:12883116:-1 11/11 None
ZK896.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:12876954:12879637:-1 gene:ZK896.5 11/11 None
ZK896.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:12876974:12879615:-1 gene:ZK896.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12876670-12879606(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK896.5
Entrez Gene 178239 Entrez gene
SwissProt Q9XUA8 EMBL-EBI
WormBase CE28276 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05320 Hypothetical protein ZK896.5 [Caenorhabditis elegans] ref|NP_502453.1| ZK896.5 [Caenorhabditis elegans] 0.0
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 0.0
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 1.0E-178
blast CAB05327 Hypothetical protein ZK896.3 [Caenorhabditis elegans] ref|NP_502455.2| ZK896.3 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.3E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.4E-16
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.1E-49
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.3E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024396 2 470-492,505-522
Sequence
Target Sequence 
>C. ELEGANS:177681_S_AT
tccaattatccagggccacctgtctatgcccttggagactctatcaccgttagttataaa
ttgaatggtggtgtctcttctggaccgttcgtatcatttgggtttgatagttatagttct
gcatcaacacatggtgggaatcttcgtcacgatcgtcttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAATTATCCAGGGCCACCTGTCT 464 587 967 Antisense
ATTATCCAGGGCCACCTGTCTATGC 347 13 971 Antisense
CTGTCTATGCCCTTGGAGACTCTAT 293 239 986 Antisense
CCTTGGAGACTCTATCACCGTTAGT 619 269 996 Antisense
GACTCTATCACCGTTAGTTATAAAT 644 373 1003 Antisense
TGAATGGTGGTGTCTCTTCTGGACC 572 575 1028 Antisense
TCTGGACCGTTCGTATCATTTGGGT 295 607 1045 Antisense
GACCGTTCGTATCATTTGGGTTTGA 437 273 1049 Antisense
GGGTTTGATAGTTATAGTTCTGCAT 169 497 1066 Antisense
GTTATAGTTCTGCATCAACACATGG 462 447 1076 Antisense
GAATCTTCGTCACGATCGTCTTGGC 418 327 1104 Antisense
Sequence Source Affymetrix Proprietary Database