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[177679_at]

Description T02B5.4 /REP_DB=WormBase Gene ID /WP=CE16321 /TR=P92015 /GB=CAB03275.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 10      6grp_cgc > 47      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 48.2
(-2.4)
A 		39.7
(-2.9)
A 		37.1
(-3)
A 		143.7
(3)
P 		107
B 12.4
(-3)
A 		34
(-2)
A 		26.2
(-2.4)
A 		142.2
(3)
P 		130
C 9.4
(-3)
A 		35.2
(-1.8)
A 		21.4
(-2.4)
A 		137.6
(3)
A 		128
avr 23.3
(-3) 		36.3
(-2.3) 		28.2
(-2.8) 		141.2
(3) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 56
(3)
A 		8.3
(-2.6)
A 		17.9
(-1.4)
A 		4.5
(-3)
A 		10
(-2.4)
A 		42.3
(1.4)
A 		52
B 19.6
(-1.2)
A 		10.8
(-2.6)
A 		7.9
(-3)
A 		47.2
(3)
A 		27
(-0.1)
A 		26.6
(-0.1)
A 		39
C 5.7
(-3)
A 		34.5
(0.7)
A 		52.9
(3)
A 		6.8
(-2.9)
A 		21
(-1.1)
A 		29.7
(0.1)
A 		47
avr 27.1
(0.7) 		17.9
(-3) 		26.2
(0.3) 		19.5
(-2.4) 		19.3
(-2.4) 		32.9
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.6
(1.4)
A 		8.6
(-3)
A 		9.7
(-2.5)
A 		21
(3)
P 		12
B 3.9
(-3)
A 		8.4
(-2)
A 		6.1
(-2.5)
A 		30.3
(3)
P 		26
C 3.1
(-3)
A 		10.1
(-0.9)
A 		7.5
(-1.7)
A 		23.2
(3)
A 		20
avr 8.2
(-2.9) 		9
(-2.6) 		7.8
(-3) 		24.8
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 10.3
(3)
A 		3
(-1.8)
A 		3.9
(-1.2)
A 		1.1
(-3)
A 		3
(-1.8)
A 		10.3
(3)
A 		9
B 6.8
(-0.2)
A 		3.6
(-2)
A 		1.9
(-3)
A 		12.5
(3)
A 		11
(2.2)
A 		9.9
(1.5)
A 		11
C 2.1
(-2.7)
A 		10.5
(1.5)
A 		13.5
(3)
A 		1.4
(-3)
A 		6.8
(-0.3)
A 		10
(1.3)
A 		12
avr 6.4
(-1.4) 		5.7
(-2.2) 		6.4
(-1.4) 		5
(-3) 		6.9
(-0.8) 		10.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177679_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13541
Sequence Type Exemplar sequence
Representative Public ID T02B5.4 NCBI
Target Description T02B5.4 /REP_DB=WormBase Gene ID /WP=CE16321 /TR=P92015 /GB=CAB03275.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074104 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-26) (srd-26) mRNA, complete cds. 11/11 None
SNAP00000018956 ENSEMBL cdna:SNAP chromosome:CEL140:V:14164139:14165429:-1 11/11 None
GENEFINDER00000018963 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14160373:14165366:-1 11/11 None
T02B5.4 ENSEMBL cdna:known chromosome:CEL140:V:14164139:14165429:-1 gene:T02B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14164138-14165429(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-26
Ensembl T02B5.4
Entrez Gene 187979 Entrez gene
SwissProt P92015 EMBL-EBI
WormBase CE16321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03273 Hypothetical protein T02B5.3 [Caenorhabditis elegans] ref|NP_506504.1| T02B5.3 [Caenorhabditis elegans] 0.0
blast CAB03272 Hypothetical protein T02B5.1 [Caenorhabditis elegans] ref|NP_506506.1| T02B5.1 [Caenorhabditis elegans] 0.0
blast CAE61007 Hypothetical protein CBG04745 [Caenorhabditis briggsae] 0.0
blast CAB03275 Hypothetical protein T02B5.4 [Caenorhabditis elegans] ref|NP_506505.1| Serpentine Receptor, class D (delta) family member (srd-26) [Caenorhabditis elegans] sp|P92015|SRD26_CAEEL Serpentine receptor class delta-26 (Protein srd-26) 1.0E-180
blast CAB05560 Hypothetical protein M01B2.2 [Caenorhabditis elegans] ref|NP_506773.1| Serpentine Receptor, class D (delta) family member (srd-28) [Caenorhabditis elegans] sp|O17956|SRD28_CAEEL Serpentine receptor class delta-28 (Protein srd-28) 1.0E-140
blast CAB03433 Hypothetical protein T26E4.12 [Caenorhabditis elegans] ref|NP_506942.1| Serpentine Receptor, class D (delta) family member (srd-27) [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506505.1 7 5-27,48-70,85-107,120-142,174-196,224-246,256-278
T02B5.4 7 5-27,48-70,85-107,120-142,174-196,224-246,256-278
SNAP00000018956 7 5-27,48-70,85-107,120-142,174-196,224-246,256-278
GENEFINDER00000018963 7 67-89,102-124,129-151,158-180,203-225,238-260,874-896
Sequence
Target Sequence 
>C. ELEGANS:177679_AT
caaaagtcttgtcttcgttgcactctgcttatcaatcccatccttcatccatatggccgc
ctggatcaggtcatacgatccaaacgaagcattcgttgttccagactcttttggattggc
atcaagtcatttgattttgggaggtcatattgtctaccggtcaacaattacgcttatctt
gcaactatttatcacatccgttctggttctgattgcttatgcatggattcggaatacact
tctaagttttgccatcaaaatgggttccgataaaaacgatgtgaaaaatctaaatgcacg
acttgtaaaggttatcaatttccaagtgtttcttccaaccttcatctttctgggattctt
catatttgcagcaatgttcggtcgttatattactgtgaatattgctcaatatctcgtctc
tattgctttcatgttttccccaatctgctcaccattttcttatatcctttttgttcctca
ttacctgaatgtgataaccggaaacaagaagccggccgaaaatcgtgcgacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGTCTTGTCTTCGTTGCACTC 92 191 372 Antisense
TCGTTGCACTCTGCTTATCAATCCC 492 603 386 Antisense
ATGGCCGCCTGGATCAGGTCATACG 457 45 424 Antisense
ACGAAGCATTCGTTGTTCCAGACTC 596 91 455 Antisense
GGGAGGTCATATTGTCTACCGGTCA 75 495 510 Antisense
ACCGGTCAACAATTACGCTTATCTT 411 87 527 Antisense
TTTATCACATCCGTTCTGGTTCTGA 212 675 559 Antisense
CAACCTTCATCTTTCTGGGATTCTT 233 187 707 Antisense
CGTCTCTATTGCTTTCATGTTTTCC 152 247 786 Antisense
TTTCTTATATCCTTTTTGTTCCTCA 32 673 827 Antisense
AAGCCGGCCGAAAATCGTGCGACGG 513 145 880 Antisense
Sequence Source Affymetrix Proprietary Database