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[177678_at]

Description T12A7.2 /REP_DB=WormBase Gene ID /WP=CE23979 /TR=Q22423 /GB=CAA98142.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 48      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 13.5
(-3)
A 		73.6
(-0.5)
A 		20.6
(-2.7)
A 		160.6
(3)
A 		147
B 70.1
(-0.5)
A 		20.8
(-2.6)
A 		11.4
(-3)
A 		154.4
(3)
A 		143
C 61.4
(-0.5)
A 		7.1
(-3)
A 		17.7
(-2.5)
A 		136.1
(3)
A 		129
avr 48.3
(-1.6) 		33.8
(-2.2) 		16.6
(-3) 		150.4
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 63.2
(3)
A 		15.5
(-2.9)
A 		14.7
(-3)
A 		20.4
(-2.3)
A 		36.5
(-0.3)
A 		58.4
(2.4)
A 		49
B 110.8
(3)
A 		23
(-2.2)
A 		41.7
(-1.1)
A 		9.4
(-3)
A 		56.4
(-0.2)
A 		11.9
(-2.9)
A 		101
C 9
(-2.5)
A 		31.2
(-0.8)
A 		12
(-2.3)
A 		36.2
(-0.4)
A 		2.4
(-3)
A 		81.2
(3)
A 		79
avr 61
(3) 		23.2
(-2.8) 		22.8
(-2.9) 		22
(-3) 		31.8
(-1.5) 		50.5
(1.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 4.9
(-3)
A 		16
(0.6)
A 		5.4
(-2.8)
A 		23.5
(3)
A 		19
B 22.4
(0.9)
A 		5.1
(-2.5)
A 		2.6
(-3)
A 		32.9
(3)
A 		30
C 20.3
(2.3)
A 		2
(-3)
A 		6.2
(-1.8)
A 		22.9
(3)
A 		21
avr 15.9
(0.1) 		7.7
(-2.2) 		4.7
(-3) 		26.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 11.6
(1.6)
A 		5.5
(-1.7)
A 		3.2
(-3)
A 		5.2
(-1.9)
A 		11
(1.3)
A 		14.2
(3)
A 		11
B 38.6
(3)
A 		7.7
(-2.1)
A 		10.1
(-1.7)
A 		2.5
(-3)
A 		22.9
(0.4)
A 		4.5
(-2.7)
A 		36
C 3.3
(-2.4)
A 		9.5
(-1)
A 		3.1
(-2.5)
A 		7.3
(-1.5)
A 		0.8
(-3)
A 		27.2
(3)
A 		26
avr 17.8
(3) 		7.6
(-1.8) 		5.5
(-2.8) 		5
(-3) 		11.6
(0.1) 		15.3
(1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177678_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9125
Sequence Type Exemplar sequence
Representative Public ID T12A7.2 NCBI
Target Description T12A7.2 /REP_DB=WormBase Gene ID /WP=CE23979 /TR=Q22423 /GB=CAA98142.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069828 NCBI Caenorhabditis elegans T12A7.2 (T12A7.2) mRNA, complete cds. 11/11 None
T12A7.2.1 ENSEMBL cdna:known chromosome:CEL140:IV:11755244:11759366:-1 gene:T12A7.2 11/11 None
T12A7.2.2 ENSEMBL cdna:known chromosome:CEL140:IV:11755244:11761034:-1 gene:T12A7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004574 6/11 Cross Hyb Matching Probes None
SNAP00000004575 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004579 4/11 Cross Hyb Matching Probes None
GENEFINDER00000004583 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11755249-11759350(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T12A7.2
Entrez Gene 178110 Entrez gene
SwissProt Q22423 EMBL-EBI
WormBase CE23979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98142 Hypothetical protein T12A7.2 [Caenorhabditis elegans] ref|NP_502229.1| T12A7.2 [Caenorhabditis elegans] 0.0
blast CAE62124 Hypothetical protein CBG06165 [Caenorhabditis briggsae] 0.0
blast CAE63891 Hypothetical protein CBG08460 [Caenorhabditis briggsae] 4.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502229.1 1 9-31
T12A7.2.1 1 9-31
T12A7.2.2 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:177678_AT
gagtacacagattggctacacctccaccaagttacacatcggtagatgatctcaacagcg
ctgaagctcaaaccccgcctacatacgaagaagcgacacgaattgaaattgagaatgtta
tcgcagaggaaatagaatcagaagaagccaaggatgatagcgttgagcctgcagcaaaga
ctcttctcagtttagatgctgaacaggagaagcacgtgaagaaacagctggaaactttga
aacccctgacgaaattcatcggtggagactactgggagtatgccaaacttcggaaaacat
actgggaggcgatggaatcatatgaagatgctgtcacagaacaacacaaagaacgttcgg
agcaggcagaacaggcaaccacaaagtctcaaacatataaaaatgattgtcgtcagaaga
tgattggatttatcaaaaagtcgattaacgagcagaagggaagccatgccgaatgtgttc
tcaaatttcatgacgaagagatcgcctatcatagcgccatggccgatgcaattcctgtat
acga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTACACAGATTGGCTACACCTCC 558 399 875 Antisense
CACCTCCACCAAGTTACACATCGGT 181 201 893 Antisense
TCAACAGCGCTGAAGCTCAAACCCC 151 629 926 Antisense
CAAACCCCGCCTACATACGAAGAAG 391 191 943 Antisense
GGATGATAGCGTTGAGCCTGCAGCA 127 515 1026 Antisense
GCCTGCAGCAAAGACTCTTCTCAGT 224 283 1041 Antisense
GAAACCCCTGACGAAATTCATCGGT 234 357 1113 Antisense
GGAGCAGGCAGAACAGGCAACCACA 667 499 1233 Antisense
GAAGCCATGCCGAATGTGTTCTCAA 466 345 1334 Antisense
AAGAGATCGCCTATCATAGCGCCAT 280 155 1370 Antisense
TGGCCGATGCAATTCCTGTATACGA 158 545 1394 Antisense
Sequence Source Affymetrix Proprietary Database