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[177677_at]

Description F46B3.9 /REP_DB=WormBase Gene ID /WP=CE18691 /TR=Q9XV21 /GB=CAB04398.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 3.2
(-3)
A 		39.6
(-1.2)
A 		36.4
(-1.4)
A 		125.9
(3)
P 		123
B 57.3
(-2)
A 		61.5
(-0.8)
A 		74.2
(3)
A 		53.9
(-3)
A 		20
C 58.2
(-1.5)
A 		65.2
(-1)
A 		33.6
(-3)
A 		129.5
(3)
P 		96
avr 39.6
(-3) 		55.4
(-1.5) 		48.1
(-2.2) 		103.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 53.3
(2.6)
A 		2.6
(-3)
A 		43
(1.4)
A 		40.8
(1.2)
A 		6.9
(-2.5)
A 		57.1
(3)
A 		55
B 21.2
(-2)
A 		52.9
(0)
A 		99.7
(3)
A 		27.4
(-1.6)
A 		5.1
(-3)
A 		24.7
(-1.8)
A 		95
C 35
(-0.7)
A 		50.5
(0.8)
A 		21.4
(-2)
A 		73.5
(3)
A 		11.2
(-3)
A 		32
(-1)
A 		62
avr 36.5
(0.7) 		35.3
(0.5) 		54.7
(3) 		47.2
(2) 		7.7
(-3) 		37.9
(0.9) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.2
(-3)
A 		8.6
(-0.4)
A 		9.5
(-0.1)
A 		18.4
(3)
P 		17
B 18.3
(3)
A 		15.2
(0.3)
A 		17.2
(2)
A 		11.5
(-3)
A 		7
C 19.3
(1.5)
A 		18.7
(1.2)
A 		11.7
(-3)
A 		21.8
(3)
P 		10
avr 12.9
(-2.9) 		14.2
(-1.1) 		12.8
(-3) 		17.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.8
(1.1)
A 		0.9
(-3)
A 		9.4
(0.9)
A 		10.4
(1.4)
A 		2.1
(-2.4)
A 		13.9
(3)
A 		13
B 7.4
(-1.6)
A 		17.6
(1.2)
A 		24.2
(3)
A 		7.3
(-1.6)
A 		2.1
(-3)
A 		9.2
(-1.1)
A 		22
C 13
(1.8)
A 		15.4
(3)
A 		5.5
(-2)
A 		14.8
(2.7)
A 		3.6
(-3)
A 		10.7
(0.6)
A 		12
avr 10.1
(1.3) 		11.3
(2) 		13
(3) 		10.8
(1.7) 		2.6
(-3) 		11.3
(2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177677_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14459
Sequence Type Exemplar sequence
Representative Public ID F46B3.9 NCBI
Target Description F46B3.9 /REP_DB=WormBase Gene ID /WP=CE18691 /TR=Q9XV21 /GB=CAB04398.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075579 NCBI Caenorhabditis elegans F46B3.9 (F46B3.9) mRNA, complete cds. 11/11 None
SNAP00000039765 ENSEMBL cdna:SNAP chromosome:CEL140:V:20621681:20624194:-1 9/11 None
F46B3.9 ENSEMBL cdna:known chromosome:CEL140:V:20621681:20624194:-1 gene:F46B3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039769 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20621680-20624194(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46B3.9
Entrez Gene 191755 Entrez gene
SwissProt Q9XV21 EMBL-EBI
WormBase CE18691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 0.0
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 1.0E-92
blast AAF61272 spore coat protein sp45 [Polysphondylium pallidum] 5.0E-25
blast XP_428511 PREDICTED: similar to spore coat protein sp45, partial [Gallus gallus] 2.0E-23
blast XP_428511 PREDICTED: similar to spore coat protein sp45, partial [Gallus gallus] 7.0E-19
blast CAB04397 Hypothetical protein F46B3.14 [Caenorhabditis elegans] ref|NP_507983.1| F46B3.14 [Caenorhabditis elegans] 7.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177677_AT
gtaagctggttaacggctctccaaaatgtgttccagaattggaccaatgcagtcatatca
aatgtagcatcggtagccattgtgagaatggagaatgtgttccagatgcggtcactgaaa
atccatgtacctggatcaagtgcagtctcggatatcattgtgctgttgtaaatggcggag
gaggatgtgttccggaattaagagcattagaaaatctcccagacttggatcaatgcattc
atatcaaatgtagtcttggtagtcattgtgaaaacggacagtgtgttccaggtaccaaat
ttttcatttgctctgtaaaatgtccaattccagatctcggtccaattgacgcctgcgact
cgataacatgtgaaactggcttcacttgcgttgttgaaaatggagcaagcgtttgtattc
cagacggtacaccaataaacccatgtatcattatgcagtgcccaactggagaaaagtgta
ttttcaccaatggaccaccgatctgtgttccaggtaggctttctcagtcacctcttagtt
atcctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAAGCTGGTTAACGGCTCTCCAAA 597 461 485 Antisense
GAATGTGTTCCAGATGCGGTCACTG 610 329 577 Antisense
ACCTGGATCAAGTGCAGTCTCGGAT 29 87 613 Antisense
GTCTCGGATATCATTGTGCTGTTGT 287 471 629 Antisense
ACGGACAGTGTGTTCCAGGTACCAA 128 97 758 Antisense
AATGTCCAATTCCAGATCTCGGTCC 333 163 803 Antisense
TCCAATTGACGCCTGCGACTCGATA 327 587 825 Antisense
TGAAACTGGCTTCACTTGCGTTGTT 388 573 855 Antisense
ACCAATGGACCACCGATCTGTGTTC 577 83 970 Antisense
TGTGTTCCAGGTAGGCTTTCTCAGT 379 553 988 Antisense
CTCAGTCACCTCTTAGTTATCCTAT 264 229 1007 Antisense
Sequence Source Affymetrix Proprietary Database