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[177675_at]

Description C34E7.2 /REP_DB=WormBase Gene ID /WP=CE03059 /TR=Q18457 /GB=CAA91793.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 92      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 64      6grp_total > 91      4grp_total > 31      6grp_highest_sub > 05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 755
1 2 3 4 range
A 1008.8
(3)
P 		509.9
(-2.9)
P 		502.4
(-3)
P 		639.3
(-1.4)
P 		506
B 1048.4
(3)
P 		582.6
(-1.8)
P 		468.7
(-3)
P 		851.1
(1)
P 		580
C 1172.2
(3)
P 		470.2
(-2.6)
P 		417
(-3)
P 		702.9
(-0.7)
P 		755
avr 1076.5
(3) 		520.9
(-2.4) 		462.7
(-3) 		731.1
(-0.4) 		614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 592.2
(-1.7)
P 		837.9
(0.7)
P 		463.5
(-3)
P 		799.8
(0.3)
P 		1068.1
(3)
P 		781.1
(0.2)
P 		605
B 782.5
(-0.6)
P 		677.1
(-1.8)
P 		571.9
(-3)
P 		1104.8
(3)
P 		842.9
(0.1)
P 		676.4
(-1.8)
P 		533
C 620
(-2.7)
P 		647.4
(-2.3)
P 		702.3
(-1.4)
P 		893
(1.5)
P 		988.9
(3)
P 		602
(-3)
P 		387
avr 664.9
(-1.7) 		720.8
(-0.8) 		579.2
(-3) 		932.5
(2.5) 		966.6
(3) 		686.5
(-1.3) 		387
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 367.3
(3)
P 		110.7
(-2.6)
P 		131.3
(-2.2)
P 		93.6
(-3)
P 		274
B 334.3
(3)
P 		143.9
(-2.1)
P 		108.6
(-3)
P 		181.4
(-1.1)
P 		226
C 388
(3)
P 		135.2
(-2.6)
P 		145.3
(-2.4)
P 		118.5
(-3)
P 		270
avr 363.2
(3) 		129.9
(-3) 		128.4
(-3) 		131.2
(-2.9) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 109.2
(-2.8)
P 		298
(2.3)
P 		100.9
(-3)
P 		202.8
(-0.2)
P 		322.3
(3)
P 		190.2
(-0.6)
P 		221
B 272.3
(0.9)
P 		225.4
(-0.5)
P 		138.9
(-3)
P 		292.6
(1.5)
P 		342.5
(3)
P 		252.2
(0.3)
P 		204
C 229.8
(-0.8)
P 		197.5
(-2.2)
P 		178.7
(-3)
P 		179.6
(-3)
P 		320
(3)
P 		201.5
(-2)
P 		141
avr 203.8
(-1) 		240.3
(0.2) 		139.5
(-3) 		225
(-0.3) 		328.3
(3) 		214.6
(-0.6) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177675_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17338
Sequence Type Exemplar sequence
Representative Public ID C34E7.2 NCBI
Target Description C34E7.2 /REP_DB=WormBase Gene ID /WP=CE03059 /TR=Q18457 /GB=CAA91793.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077745 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) (pqn-18) mRNA, complete cds. 11/11 None
GENEFINDER00000036181 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12913242:12919544:1 9/11 None
SNAP00000036177 ENSEMBL cdna:SNAP chromosome:CEL140:X:12918910:12919544:1 9/11 None
C34E7.1.2 ENSEMBL cdna:known chromosome:CEL140:X:12907751:12919969:1 gene:C34E7.1 11/11 None
C34E7.1.1 ENSEMBL cdna:known chromosome:CEL140:X:12913233:12919969:1 gene:C34E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12918909-12919457(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-18
Ensembl C34E7.1
Entrez Gene 181425 Entrez gene
SwissProt Q18456 EMBL-EBI
WormBase CE36355 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91792 Hypothetical protein C34E7.1 [Caenorhabditis elegans] ref|NP_510146.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) [Caenorhabditis elegans] 1.0E-157
blast CAA91792 Hypothetical protein C34E7.1 [Caenorhabditis elegans] ref|NP_510146.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-18) [Caenorhabditis elegans] 1.0E-146
blast CAE57198 Hypothetical protein CBG00045 [Caenorhabditis briggsae] 1.0E-68
blast CAE57198 Hypothetical protein CBG00045 [Caenorhabditis briggsae] 9.0E-61
blast T19724 hypothetical protein C34E7.2 - Caenorhabditis elegans 7.0E-42
Sequence
Target Sequence 
>C. ELEGANS:177675_AT
aaatgggacaaccaccacactatcatcaatcatcatccatgggcaacggcatgggacaag
ctccacaaatgggacaaggtcatccacaacaaatgcaagagatgggaagctttaatactc
cacaacctcaagttcaaattaatcagaacactcctatctcgagcgtggctagcaccagct
cggcgagcagcttagattttccaaacgaacttggcttttttgatatgcaggatccagagc
ttccggtttcctgcgataaacttgaggagaatctaaaatcacttacagttcatgactttg
ctattcttggacgttgcgcgtttgacttttccaatcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGGACAACCACCACACTATCA 183 121 83 Antisense
CACACTATCATCAATCATCATCCAT 287 195 98 Antisense
TGGGCAACGGCATGGGACAAGCTCC 527 553 122 Antisense
AATACTCCACAACCTCAAGTTCAAA 104 173 196 Antisense
ATCAGAACACTCCTATCTCGAGCGT 643 27 224 Antisense
TCGAGCGTGGCTAGCACCAGCTCGG 501 601 241 Antisense
GGCGAGCAGCTTAGATTTTCCAAAC 41 541 264 Antisense
CTTCCGGTTTCCTGCGATAAACTTG 356 217 322 Antisense
GTTCATGACTTTGCTATTCTTGGAC 508 443 370 Antisense
ATTCTTGGACGTTGCGCGTTTGACT 367 11 385 Antisense
GCGCGTTTGACTTTTCCAATCAACA 8 285 398 Antisense
Sequence Source Affymetrix Proprietary Database