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[177673_s_at]

Description F45G2.7 /REP_DB=WormBase Gene ID /WP=CE16050 /TR=O62249 /GB=CAB07616.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 87      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 160.7
(-1.8)
P 		153.7
(-2.1)
P 		121.8
(-3)
P 		324.1
(3)
P 		202
B 245.4
(3)
P 		174.7
(-1.1)
P 		142.5
(-3)
P 		243.2
(2.9)
P 		103
C 123.5
(-3)
P 		136.2
(-2.7)
P 		158.2
(-2.1)
P 		354.5
(3)
P 		231
avr 176.5
(-1.7) 		154.9
(-2.5) 		140.8
(-3) 		307.3
(3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 164.3
(-2.6)
P 		151
(-3)
P 		211.8
(-1)
P 		204.2
(-1.3)
P 		224.9
(-0.6)
P 		336.1
(3)
P 		185
B 206.4
(0.2)
P 		162.3
(-1.4)
P 		117.9
(-3)
P 		196.5
(-0.2)
P 		237.2
(1.3)
P 		285.4
(3)
P 		168
C 184.3
(-2.2)
P 		160.5
(-3)
P 		170.7
(-2.7)
P 		180.7
(-2.4)
P 		257.5
(0.1)
P 		349.6
(3)
P 		189
avr 185
(-2) 		157.9
(-3) 		166.8
(-2.7) 		193.8
(-1.7) 		239.9
(-0) 		323.7
(3) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 58.5
(3)
P 		33.4
(-2.6)
P 		31.8
(-3)
P 		47.4
(0.5)
P 		27
B 78.3
(3)
P 		43.2
(-1.6)
P 		33
(-3)
P 		51.8
(-0.5)
P 		45
C 40.9
(-2.5)
P 		39.2
(-3)
P 		55.2
(1.7)
P 		59.8
(3)
P 		21
avr 59.2
(3) 		38.6
(-3) 		40
(-2.6) 		53
(1.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 30.3
(-3)
P 		53.7
(-0.3)
P 		46.1
(-1.2)
P 		51.8
(-0.5)
P 		67.9
(1.4)
P 		81.8
(3)
P 		52
B 71.8
(0.3)
P 		54
(-1)
P 		28.6
(-3)
P 		52
(-1.2)
P 		96.4
(2.2)
P 		106.4
(3)
P 		78
C 68.3
(-0.6)
P 		49
(-2.1)
P 		43.5
(-2.5)
P 		36.3
(-3)
P 		83.3
(0.5)
P 		117
(3)
P 		81
avr 56.8
(-1.3) 		52.2
(-1.8) 		39.4
(-3) 		46.7
(-2.3) 		82.5
(1.2) 		101.7
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7637
Sequence Type Exemplar sequence
Representative Public ID F45G2.7 NCBI
Target Description F45G2.7 /REP_DB=WormBase Gene ID /WP=CE16050 /TR=O62249 /GB=CAB07616.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067373 NCBI Caenorhabditis elegans F45G2.7 (F45G2.7) mRNA, complete cds. 11/11 None
SNAP00000011672 ENSEMBL cdna:SNAP chromosome:CEL140:III:13432372:13434014:-1 11/11 None
GENEFINDER00000011682 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13433053:13434014:-1 11/11 None
F45G2.7 ENSEMBL cdna:known chromosome:CEL140:III:13433011:13434014:-1 gene:F45G2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13433048-13434010(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45G2.7
Entrez Gene 176768 Entrez gene
SwissProt O62249 EMBL-EBI
WormBase CE16050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07616 Hypothetical protein F45G2.7 [Caenorhabditis elegans] ref|NP_499774.1| F45G2.7 [Caenorhabditis elegans] 1.0E-91
blast CAB07616 Hypothetical protein F45G2.7 [Caenorhabditis elegans] ref|NP_499774.1| F45G2.7 [Caenorhabditis elegans] 2.0E-89
blast CAE73697 Hypothetical protein CBG21208 [Caenorhabditis briggsae] 4.0E-49
blast CAE73697 Hypothetical protein CBG21208 [Caenorhabditis briggsae] 6.0E-49
Sequence
Target Sequence 
>C. ELEGANS:177673_S_AT
atggctccaacattggcagaagccgaaaagttcctgagaaattcgaagattgacaaaatt
gtgctggagaaactggcggagatcttggtcacaacgatggatgattggaacctaattgcc
gatcagaaagtggccgaatcagtttgggtggtcttgacggaagctggcagaagtggcaat
ctcagcgaaaatcttggagatggtgacgtggcgaagcaacttaaaagtgtttttgagaaa
atccgtcttcgcctccaagcccagctcggaacaattcaatggaaaaacgatgaactagta
gattatgacgtcacgatatccaaaaacaataagtcttctctgcacgcggaccacacattt
caacgagtagtactgacacttaaagtgattccagctggaaaaatggatgttgaggctctt
gtcgttgactttgatgaggcccaactcaacgattttatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCCAACATTGGCAGAAGCCG 677 51 13 Antisense
AACTGGCGGAGATCTTGGTCACAAC 69 137 83 Antisense
GATTGGAACCTAATTGCCGATCAGA 703 435 115 Antisense
GTGGCCGAATCAGTTTGGGTGGTCT 479 491 142 Antisense
GGTGGTCTTGACGGAAGCTGGCAGA 359 499 159 Antisense
CTGGCAGAAGTGGCAATCTCAGCGA 212 241 176 Antisense
TTTTGAGAAAATCCGTCTTCGCCTC 508 677 243 Antisense
CCAAGCCCAGCTCGGAACAATTCAA 4 277 267 Antisense
CGGACCACACATTTCAACGAGTAGT 210 243 359 Antisense
GGATGTTGAGGCTCTTGTCGTTGAC 146 515 417 Antisense
GAGGCCCAACTCAACGATTTTATCT 599 405 448 Antisense
Sequence Source Affymetrix Proprietary Database