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[177672_at]

Description T23F6.5 /REP_DB=WormBase Gene ID /WP=CE18964 /TR=Q9XU70 /GB=CAB05628.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 41      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 6.2
(-3)
A 		118.4
(3)
A 		74
(0.6)
A 		19.7
(-2.3)
A 		112
B 16.7
(-3)
A 		40.1
(-0.6)
A 		76.3
(3)
A 		45
(-0.2)
A 		60
C 26.3
(-3)
A 		65.4
(-0.1)
A 		78
(0.9)
A 		105.9
(3)
A 		80
avr 16.4
(-3) 		74.6
(2.8) 		76.1
(3) 		56.9
(1.1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 461
1 2 3 4 5 6 range
A 15
(-3)
A 		79
(-2.1)
A 		19
(-2.9)
A 		398.7
(2.2)
P 		456.3
(3)
P 		108.6
(-1.7)
A 		441
B 65.2
(-3)
A 		95.3
(-2.5)
A 		92.5
(-2.5)
A 		416.2
(3)
P 		390.6
(2.6)
P 		80
(-2.7)
A 		351
C 34
(-3)
A 		110.2
(-2)
A 		54.8
(-2.7)
A 		476.2
(3)
P 		339.1
(1.1)
P 		85.4
(-2.3)
A 		442
avr 38.1
(-3) 		94.8
(-2.1) 		55.4
(-2.7) 		430.4
(3) 		395.3
(2.5) 		91.3
(-2.2) 		392
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.3
(-3)
A 		25.7
(3)
A 		19.4
(1.4)
A 		2.9
(-2.8)
A 		23
B 5.3
(-3)
A 		9.9
(-0.8)
A 		17.7
(3)
A 		9.6
(-0.9)
A 		12
C 8.7
(-3)
A 		18.8
(0.3)
A 		27.2
(3)
A 		17.9
(-0)
A 		19
avr 5.4
(-3) 		18.1
(1.8) 		21.4
(3) 		10.1
(-1.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 2.8
(-3)
A 		28.1
(-1.9)
A 		4.1
(-2.9)
A 		101.1
(1.4)
P 		137.7
(3)
P 		26.4
(-2)
A 		135
B 22.7
(-3)
A 		31.7
(-2.6)
A 		22.5
(-3)
A 		110.2
(0.9)
P 		158.7
(3)
P 		29.8
(-2.7)
A 		136
C 12.6
(-3)
A 		33.6
(-1.7)
A 		13.9
(-2.9)
A 		95.8
(2.1)
P 		109.7
(3)
P 		28.6
(-2)
A 		97
avr 12.7
(-3) 		31.1
(-2.1) 		13.5
(-3) 		102.4
(1.4) 		135.4
(3) 		28.3
(-2.2) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177672_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9886
Sequence Type Exemplar sequence
Representative Public ID T23F6.5 NCBI
Target Description T23F6.5 /REP_DB=WormBase Gene ID /WP=CE18964 /TR=Q9XU70 /GB=CAB05628.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070032 NCBI Caenorhabditis elegans T23F6.5 (T23F6.5) mRNA, complete cds. 11/11 None
SNAP00000000565 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12735290:12739397:-1 11/11 None
GENEFINDER00000000569 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12732870:12738359:-1 11/11 None
T23F6.5 ENSEMBL cdna:known chromosome:CEL140:IV:12735399:12737889:-1 gene:T23F6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12735404-12737895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F6.5
Entrez Gene 188811 Entrez gene
SwissProt Q9XU70 EMBL-EBI
WormBase CE18964 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05628 Hypothetical protein T23F6.5 [Caenorhabditis elegans] ref|NP_502433.1| T23F6.5 [Caenorhabditis elegans] 0.0
blast CAE60000 Hypothetical protein CBG03494 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177672_AT
aaaaagtgcatctgccacgtcagaagatctccggtcaagaaaatcgatggaggtgtaatt
gagcaaccaactaccgtattcagagaagttgaaatgaatcgagtgttggcagatgatgtt
acttcgatgacaaatttcccgtctccaacaacaacagtggtcacagaagcaccacttaca
acgaaaaagttcatgatggacattgagaatgaggagaagcatgaagccgaaacagctaag
ctaatagttttgaacaagccaaagataaaatgcgaggaaacaaattgcaactttgagaag
gacacgaaatgtggatgggctgatttaaggatgttgagcaggcatttcaataatatcagt
gtggcgatgaaaaaaagtgatgaaaatcgctatggaatttcccgccttgagccgaaatcc
tactcgggtcttctctacaaagcatccctgatcggtccgattcaaatgtcgattgacgta
tttccatctcatgagattgacgttcgaatttgtgttcaaaatcttcgaaaatgtcagact
caaacgattgccccgcgttcttggaatagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAAGTGCATCTGCCACGTCAGAA 573 129 709 Antisense
CCACGTCAGAAGATCTCCGGTCAAG 695 273 723 Antisense
GAGCAACCAACTACCGTATTCAGAG 621 389 769 Antisense
TCGATGACAAATTTCCCGTCTCCAA 212 603 832 Antisense
GTCACAGAAGCACCACTTACAACGA 371 465 868 Antisense
GGGTCTTCTCTACAAAGCATCCCTG 195 497 1134 Antisense
GCATCCCTGATCGGTCCGATTCAAA 321 309 1150 Antisense
GTCGATTGACGTATTTCCATCTCAT 662 473 1176 Antisense
GAGATTGACGTTCGAATTTGTGTTC 68 393 1201 Antisense
AATGTCAGACTCAAACGATTGCCCC 249 163 1238 Antisense
TTGCCCCGCGTTCTTGGAATAGAAT 149 697 1256 Antisense
Sequence Source Affymetrix Proprietary Database