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[177670_at]

Description ZC64.2 /REP_DB=WormBase Gene ID /WP=CE05048 /TR=Q23378 /GB=AAA80425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 49      6grp_total > 74      4grp_total > 41      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2834
1 2 3 4 range
A 2263.6
(-3)
P 		4917.6
(3)
P 		4034.2
(1)
P 		3372.2
(-0.5)
P 		2654
B 2083.6
(-3)
P 		4165.5
(3)
P 		4131.2
(2.9)
P 		3234.6
(0.3)
P 		2082
C 2146.8
(-3)
P 		4315.5
(3)
P 		3964.6
(2)
P 		2943.1
(-0.8)
P 		2169
avr 2164.7
(-3) 		4466.2
(3) 		4043.3
(1.9) 		3183.3
(-0.3) 		2302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7269
1 2 3 4 5 6 range
A 2377
(-3)
P 		3462.8
(-1.7)
P 		7170.7
(2.9)
P 		7272.9
(3)
P 		5267.7
(0.5)
P 		5887.1
(1.3)
P 		4896
B 2099
(-3)
P 		4034.6
(-0.4)
P 		6307.2
(2.7)
P 		6567.1
(3)
P 		5092.6
(1)
P 		6133.4
(2.4)
P 		4468
C 2027.5
(-3)
P 		4147.2
(-1.3)
P 		5198.5
(-0.4)
P 		9296.2
(3)
P 		4885.6
(-0.6)
P 		7203.3
(1.3)
P 		7269
avr 2167.8
(-3) 		3881.5
(-1.1) 		6225.5
(1.4) 		7712.1
(3) 		5082
(0.2) 		6407.9
(1.6) 		5544
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 888
1 2 3 4 range
A 824.2
(0.5)
P 		1067.5
(3)
P 		1054.6
(2.9)
P 		493.6
(-3)
P 		574
B 664.4
(-3)
P 		1028.8
(3)
P 		957.3
(1.8)
P 		689.3
(-2.6)
P 		364
C 710.6
(-1.5)
P 		1240.7
(2)
P 		1381.8
(3)
P 		496.3
(-3)
P 		886
avr 733.1
(-1.2) 		1112.3
(2.8) 		1131.2
(3) 		559.7
(-3) 		572

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1973
1 2 3 4 5 6 range
A 438.2
(-3)
P 		1231.5
(0.4)
P 		1561.6
(1.8)
P 		1844.6
(3)
P 		1589.5
(1.9)
P 		1433.3
(1.2)
P 		1406
B 730.3
(-3)
P 		1343
(-0.6)
P 		1531.6
(0.1)
P 		1739.4
(0.9)
P 		2069.1
(2.2)
P 		2287.1
(3)
P 		1557
C 751.5
(-3)
P 		1265.4
(-1.1)
P 		1323.1
(-0.9)
P 		1869.5
(1)
P 		1580.9
(-0)
P 		2411.4
(3)
P 		1660
avr 640
(-3) 		1280
(-0.3) 		1472.1
(0.6) 		1817.8
(2) 		1746.5
(1.7) 		2043.9
(3) 		1404
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18299
Sequence Type Exemplar sequence
Representative Public ID ZC64.2 NCBI
Target Description ZC64.2 /REP_DB=WormBase Gene ID /WP=CE05048 /TR=Q23378 /GB=AAA80425.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076265 NCBI Caenorhabditis elegans ZC64.2 (ZC64.2) mRNA, complete cds. 11/11 None
SNAP00000028295 ENSEMBL cdna:SNAP chromosome:CEL140:X:3840964:3842427:-1 11/11 None
GENEFINDER00000028306 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3840964:3842427:-1 11/11 None
ZC64.2.1 ENSEMBL cdna:known chromosome:CEL140:X:3840891:3842430:-1 gene:ZC64.2 11/11 None
ZC64.2.2 ENSEMBL cdna:known chromosome:CEL140:X:3840901:3842428:-1 gene:ZC64.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3840964-3842428(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC64.2
Entrez Gene 191072 Entrez gene
SwissProt Q23378 EMBL-EBI
WormBase CE05048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80425 Hypothetical protein ZC64.2 [Caenorhabditis elegans] ref|NP_508666.1| ZC64.2 [Caenorhabditis elegans] 1.0E-85
blast CAE68491 Hypothetical protein CBG14296 [Caenorhabditis briggsae] 5.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.1E-50
Sequence
Target Sequence 
>C. ELEGANS:177670_AT
gattttcatatttatcgccgctcttcttttaccaatttcatacgtttctgctggagcgga
tcttgatgtcccaactaacattgccaacagaaccatggcagtcaaaggacaactgtattg
tggaaagaagcctttcgaaggagccaagatccgacttttcagaacatttcaaccaaatgc
agcagatgatctcgccgagctactcgacgtaaagaacacatacattacgggaatgttcca
agttgaaggaggtaccgcgagattcccacgtaccaaaaccgatatccagccatatgtcac
aattcatcacaactgcggaatggacaataagcaaacatccaattacggctacaaacgaat
tggtgtccgtcttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCATATTTATCGCCGCTCTT 561 429 15 Antisense
CAATTTCATACGTTTCTGCTGGAGC 171 181 47 Antisense
GCTGGAGCGGATCTTGATGTCCCAA 97 295 64 Antisense
GATGTCCCAACTAACATTGCCAACA 365 407 79 Antisense
GGAGCCAAGATCCGACTTTTCAGAA 588 521 154 Antisense
AATGCAGCAGATGATCTCGCCGAGC 361 165 190 Antisense
TCTCGCCGAGCTACTCGACGTAAAG 469 609 204 Antisense
TGAAGGAGGTACCGCGAGATTCCCA 524 573 258 Antisense
GATTCCCACGTACCAAAACCGATAT 498 431 275 Antisense
AACCGATATCCAGCCATATGTCACA 167 147 291 Antisense
AAACGAATTGGTGTCCGTCTTCCAG 205 111 367 Antisense
Sequence Source Affymetrix Proprietary Database