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[177669_at]

Description F21C3.6 /REP_DB=WormBase Gene ID /WP=CE05681 /TR=Q19670 /GB=CAA95800.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 36.9
(-2.7)
A 		35.1
(-3)
A 		47
(-1.3)
A 		77.3
(3)
A 		42
B 38
(3)
A 		29.6
(0.3)
A 		25.4
(-1)
A 		19.3
(-3)
A 		19
C 50
(-0.8)
A 		13.8
(-2.6)
A 		6.9
(-3)
A 		121.9
(3)
P 		115
avr 41.6
(-1) 		26.2
(-3) 		26.4
(-3) 		72.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.2
(-1)
A 		17.3
(-1.3)
A 		34.6
(1.4)
A 		6.8
(-3)
A 		44.9
(3)
A 		42.6
(2.6)
A 		38
B 21.3
(-1.7)
A 		28.5
(0.1)
A 		40.4
(3)
A 		16.1
(-3)
A 		30.2
(0.5)
A 		29.3
(0.3)
A 		24
C 38.4
(0.8)
A 		29.7
(-1.1)
A 		47.5
(2.8)
A 		21
(-3)
A 		34.1
(-0.1)
A 		48.2
(3)
P 		27
avr 26.3
(-0.3) 		25.2
(-0.6) 		40.8
(3) 		14.6
(-3) 		36.4
(2) 		40
(2.8) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.4
(3)
A 		7.6
(-3)
A 		12.3
(1.9)
A 		11.3
(0.8)
A 		6
B 12.1
(3)
A 		7.3
(-0.6)
A 		5.9
(-1.7)
A 		4.1
(-3)
A 		8
C 16.5
(1.7)
A 		4
(-2.5)
A 		2.4
(-3)
A 		20.5
(3)
P 		18
avr 14
(3) 		6.3
(-3) 		6.9
(-2.5) 		12
(1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.5
(-2.1)
A 		6.1
(-0.8)
A 		7.5
(-0.1)
A 		1.7
(-3)
A 		13.5
(3)
A 		10.4
(1.4)
A 		12
B 7.4
(-0.7)
A 		9.5
(0.9)
A 		9.8
(1.1)
A 		4.3
(-3)
A 		12.3
(3)
A 		10.9
(2)
A 		8
C 14.2
(2)
A 		9.1
(-0.5)
A 		12.1
(1)
A 		4.2
(-3)
A 		11
(0.4)
A 		16.1
(3)
P 		12
avr 8.4
(0.3) 		8.2
(0.2) 		9.8
(1.2) 		3.4
(-3) 		12.3
(2.9) 		12.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1286
Sequence Type Exemplar sequence
Representative Public ID F21C3.6 NCBI
Target Description F21C3.6 /REP_DB=WormBase Gene ID /WP=CE05681 /TR=Q19670 /GB=CAA95800.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059658 NCBI Caenorhabditis elegans F21C3.6 (F21C3.6) mRNA, complete cds. 11/11 None
GENEFINDER00000007025 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7292091:7293761:-1 11/11 None
F21C3.6 ENSEMBL cdna:known chromosome:CEL140:I:7292091:7293893:-1 gene:F21C3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7292021-7293824(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C3.6
Entrez Gene 184761 Entrez gene
SwissProt Q19670 EMBL-EBI
WormBase CE05681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95800 Hypothetical protein F21C3.6 [Caenorhabditis elegans] ref|NP_492059.1| F21C3.6 [Caenorhabditis elegans] 2.0E-62
blast CAE74218 Hypothetical protein CBG21901 [Caenorhabditis briggsae] 6.0E-28
blast CAE74218 Hypothetical protein CBG21901 [Caenorhabditis briggsae] 7.0E-28
Sequence
Target Sequence 
>C. ELEGANS:177669_AT
acaaaaaagtcatcgccatcgtcgtcaccgacaaaaagtgaacgtggagaacgggaacgt
acaaaatggagaaaaaagcgaagggaaattgagctcaagaaggtagctgaacaattggag
cagcatcgtattagagaagaggcggagcttgcaaaaagaaaaacggaaaatcagaagaaa
gaatttcgtaaacgccaagaaatattcgagaaagtatttcaagacgctgaatctggacaa
aaagcagttgagaatgtgatgagtgattatcgggagtcaagaaatgcaatcaaagtgcag
ttatataccgattcaaatgattttattcaaacacaacaaattgaaaaatcgcatttcaac
gctgctggagaccgacttcgttcttctgaaattcaattatcaaaactagagtcagaattg
aaaaagacaaaacagatacgcgaagaatattatcaagattccatgcaaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAAAAAGTCATCGCCATCGTCGT 505 109 70 Antisense
CCATCGTCGTCACCGACAAAAAGTG 275 271 85 Antisense
GAACAATTGGAGCAGCATCGTATTA 414 353 178 Antisense
GAAGAGGCGGAGCTTGCAAAAAGAA 93 339 205 Antisense
GTATTTCAAGACGCTGAATCTGGAC 637 453 283 Antisense
GTGATGAGTGATTATCGGGAGTCAA 514 483 325 Antisense
AGTGCAGTTATATACCGATTCAAAT 668 59 363 Antisense
AAAATCGCATTTCAACGCTGCTGGA 415 133 414 Antisense
TTTCAACGCTGCTGGAGACCGACTT 418 671 423 Antisense
GACCGACTTCGTTCTTCTGAAATTC 34 359 439 Antisense
TATTATCAAGATTCCATGCAAAGTT 479 663 517 Antisense
Sequence Source Affymetrix Proprietary Database