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[177668_s_at]

Description B0393.4 /REP_DB=WormBase Gene ID /WP=CE00857 /TR=Q17493 /GB=CAA86057.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 89.1
(-3)
A 		137.9
(-0.5)
P 		103.2
(-2.3)
A 		206.5
(3)
P 		117
B 110.6
(0.6)
P 		118.4
(1.3)
A 		70.1
(-3)
A 		137.5
(3)
P 		67
C 102.1
(-2.1)
A 		93.9
(-2.5)
A 		81.7
(-3)
P 		214.8
(3)
P 		133
avr 100.6
(-2.1) 		116.7
(-1.1) 		85
(-3) 		186.3
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 111.1
(0.1)
A 		3.8
(-3)
A 		68.9
(-1.1)
A 		87.9
(-0.6)
A 		192.4
(2.4)
M 		213.5
(3)
P 		210
B 107.5
(-1.3)
A 		87.9
(-2.3)
A 		74.1
(-3)
A 		127.5
(-0.3)
A 		159
(1.4)
P 		191
(3)
P 		117
C 53.6
(-2.9)
A 		132.3
(0.2)
A 		52.2
(-3)
A 		84.5
(-1.7)
A 		133
(0.3)
P 		200.1
(3)
P 		148
avr 90.7
(-1.9) 		74.7
(-2.6) 		65.1
(-3) 		100
(-1.5) 		161.5
(1.2) 		201.5
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 32.5
(3)
A 		29.9
(0.2)
P 		27
(-3)
A 		30.2
(0.5)
P 		6
B 35.3
(3)
P 		29.2
(1.1)
A 		16.2
(-3)
A 		29.3
(1.1)
P 		19
C 33.8
(1.4)
A 		27
(-3)
A 		28.5
(-2)
P 		36.2
(3)
P 		9
avr 33.9
(3) 		28.7
(-0.1) 		23.9
(-3) 		31.9
(1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 20.5
(-1)
A 		1.3
(-3)
A 		15
(-1.6)
A 		22.3
(-0.8)
A 		58.1
(3)
M 		52
(2.4)
P 		57
B 37.4
(-0.8)
A 		29.3
(-1.7)
A 		18
(-3)
A 		33.8
(-1.2)
A 		64.6
(2.3)
P 		71.2
(3)
P 		53
C 19.9
(-2.3)
A 		40.4
(0)
A 		13.3
(-3)
A 		17
(-2.6)
A 		43
(0.3)
P 		67
(3)
P 		54
avr 25.9
(-1.7) 		23.7
(-2) 		15.4
(-3) 		24.4
(-1.9) 		55.2
(2) 		63.4
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7618
Sequence Type Exemplar sequence
Representative Public ID B0393.4 NCBI
Target Description B0393.4 /REP_DB=WormBase Gene ID /WP=CE00857 /TR=Q17493 /GB=CAA86057.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065580(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065580 NCBI Caenorhabditis elegans B0393.4 (B0393.4) mRNA, complete cds. 11/11 None
SNAP00000037567 ENSEMBL cdna:SNAP chromosome:CEL140:III:4759765:4763490:-1 11/11 None
GENEFINDER00000037577 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4759765:4763490:-1 11/11 None
B0393.4 ENSEMBL cdna:known chromosome:CEL140:III:4759726:4763571:-1 gene:B0393.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4759764-4763490(-) 98.26 100.0
Public Domain and Genome References
Gene Title
Ensembl B0393.4
Entrez Gene 175631 Entrez gene
SwissProt Q17493 EMBL-EBI
WormBase CE00857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86057 Hypothetical protein B0393.4 [Caenorhabditis elegans] ref|NP_497981.1| B0393.4 [Caenorhabditis elegans] 0.0
blast CAE71135 Hypothetical protein CBG17990 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177668_S_AT
gggacgtgtggagccaagtatcgcatgccaccagggtgtcaaagttggtttgtacagtga
tgcgtgcaatgaaaagacaaaaattgatttgaacatcaagaacaacttcaaggatccagg
aatgttgtgtgataaaaatgatcgtcgattcattcttgttcttcaatctgaacttgattt
gatggtggacagcatgaagcatttggcaaataatgttggatttcattatgatggttttcc
agtcactcccaactgttttgtgattgttgaagcattcgtggaagctatttctgacattat
gaatgagaaaattgacgtagaaaccatgcgttggttcagtctgctcggacaaaaagttga
tgcagaagacagtgtttctccatgggaaactggcaccgatttccattgtgctcgtcattc
ggagccaaagagcaatttctgtgcttcggttactgtaggaagaacgtgttgcatcgttta
tcatgtcattggaagtttcttccgacgttaccatctcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACGTGTGGAGCCAAGTATCGCA 25 495 1857 Antisense
GTATCGCATGCCACCAGGGTGTCAA 80 455 1874 Antisense
GTTGGTTTGTACAGTGATGCGTGCA 410 435 1900 Antisense
TATGATGGTTTTCCAGTCACTCCCA 517 655 2083 Antisense
CAGTCACTCCCAACTGTTTTGTGAT 618 207 2096 Antisense
CGTTGGTTCAGTCTGCTCGGACAAA 451 247 2185 Antisense
GAAACTGGCACCGATTTCCATTGTG 469 357 2242 Antisense
TTTCCATTGTGCTCGTCATTCGGAG 359 667 2256 Antisense
CAATTTCTGTGCTTCGGTTACTGTA 184 179 2289 Antisense
GTGTTGCATCGTTTATCATGTCATT 562 485 2322 Antisense
TTCTTCCGACGTTACCATCTCAAGA 244 689 2353 Antisense
Sequence Source Affymetrix Proprietary Database