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[177666_at]

Description D1086.5 /REP_DB=WormBase Gene ID /WP=CE09063 /TR=O17728 /GB=CAB04021.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 74      6grp_total > 65      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2971
1 2 3 4 range
A 1683.3
(0.2)
P 		737.1
(-2.2)
P 		413.4
(-3)
P 		2804.7
(3)
P 		2391
B 1798.9
(-0.2)
P 		914.1
(-2.1)
P 		511.7
(-3)
P 		3279.3
(3)
P 		2768
C 2039
(0.2)
P 		694.5
(-2.7)
P 		549.3
(-3)
P 		3384.6
(3)
P 		2835
avr 1840.4
(0) 		781.9
(-2.3) 		491.5
(-3) 		3156.2
(3) 		2665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 759
1 2 3 4 5 6 range
A 378.7
(-3)
P 		602.4
(-0.7)
P 		974
(3)
P 		786.5
(1.1)
P 		604.7
(-0.7)
P 		878.5
(2)
P 		595
B 311
(-3)
P 		720.7
(0.6)
P 		911
(2.3)
P 		797.5
(1.3)
P 		732.1
(0.7)
P 		986.3
(3)
P 		675
C 551.6
(-3)
P 		704.3
(-1.2)
P 		631.1
(-2.1)
P 		828.6
(0.2)
P 		611.5
(-2.3)
P 		1070.2
(3)
P 		519
avr 413.8
(-3) 		675.8
(-0.2) 		838.7
(1.5) 		804.2
(1.1) 		649.4
(-0.5) 		978.3
(3) 		565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 612.9
(3)
P 		160
(-2.4)
P 		108.1
(-3)
P 		410.5
(0.6)
P 		505
B 573.6
(1.7)
P 		225.8
(-1.9)
P 		118.6
(-3)
P 		698.8
(3)
P 		580
C 675
(3)
P 		199.7
(-2.9)
P 		191.4
(-3)
P 		570.7
(1.7)
P 		484
avr 620.5
(3) 		195.2
(-2.3) 		139.4
(-3) 		560
(2.2) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 69.8
(-3)
P 		214.3
(3)
P 		212.1
(2.9)
P 		199.5
(2.4)
P 		182.5
(1.7)
P 		213.9
(3)
P 		145
B 108.2
(-3)
P 		239.9
(0)
P 		221.2
(-0.4)
P 		211.2
(-0.6)
P 		297.4
(1.4)
P 		367.8
(3)
P 		260
C 204.5
(-1.7)
P 		214.9
(-1.4)
P 		160.6
(-3)
P 		166.6
(-2.8)
P 		197.9
(-1.9)
P 		358.3
(3)
P 		198
avr 127.5
(-3) 		223
(0.1) 		198
(-0.7) 		192.4
(-0.9) 		225.9
(0.2) 		313.3
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177666_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14493
Sequence Type Exemplar sequence
Representative Public ID D1086.5 NCBI
Target Description D1086.5 /REP_DB=WormBase Gene ID /WP=CE09063 /TR=O17728 /GB=CAB04021.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074093 NCBI Caenorhabditis elegans D1086.5 (D1086.5) mRNA, complete cds. 11/11 None
GENEFINDER00000017542 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14091539:14092885:-1 11/11 None
D1086.5 ENSEMBL cdna:known chromosome:CEL140:V:14091489:14092899:-1 gene:D1086.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017535 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14091538-14092885(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.5
Entrez Gene 183933 Entrez gene
SwissProt O17728 EMBL-EBI
WormBase CE09063 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04021 Hypothetical protein D1086.5 [Caenorhabditis elegans] ref|NP_506494.1| D1086.5 [Caenorhabditis elegans] 1.0E-134
blast CAE60985 Hypothetical protein CBG04720 [Caenorhabditis briggsae] 2.0E-66
blast CAE61020 Hypothetical protein CBG04762 [Caenorhabditis briggsae] 2.0E-43
Sequence
Target Sequence 
>C. ELEGANS:177666_AT
cagaatgttcattttttcccggacgtagtaatataaagtattgcaggttatttgaaggtg
ctaaatattattggaggcataattcaattgcgtggaatccggaacagaccaaaaatatga
gtcttgttgaactcagaaagcattgtgatgattattttgtttgcatggaaaatacgggat
gctacatggattttgtcaattatcaggaactggacaagtgcattgatgacgtatttcatc
taggaccaatgtattattgtgagaaaacattgaaggaagttattgagaaaaccccggatc
aagtttctgaatgtgttaaggattatctcaaaaataaaaatccggacaaagtcgactgcg
tgagcatccagacaaaaagtaaatgctttctcgaagatgttgggaagcattgtggttctg
attttttgagtctgtacaagcagcacataaatattcgtctctacaatcgtgcttgcgatg
gacgtcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAATGTTCATTTTTTCCCGGACG 13 203 92 Antisense
ATTGCGTGGAATCCGGAACAGACCA 147 3 178 Antisense
ACGGGATGCTACATGGATTTTGTCA 534 95 265 Antisense
GACGTATTTCATCTAGGACCAATGT 35 379 319 Antisense
AACCCCGGATCAAGTTTCTGAATGT 285 147 381 Antisense
AGTCGACTGCGTGAGCATCCAGACA 271 61 441 Antisense
GTTGGGAAGCATTGTGGTTCTGATT 227 437 490 Antisense
GGTTCTGATTTTTTGAGTCTGTACA 475 507 505 Antisense
GCAGCACATAAATATTCGTCTCTAC 651 313 531 Antisense
TTCGTCTCTACAATCGTGCTTGCGA 541 695 545 Antisense
AATCGTGCTTGCGATGGACGTCTTC 461 169 556 Antisense
Sequence Source Affymetrix Proprietary Database