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[177665_at]

Description Y69H2.7 /REP_DB=WormBase Gene ID /WP=CE22825 /TR=Q9U1U3 /GB=CAB63404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 59      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 187.4
(-0.7)
A 		295.7
(1.6)
A 		360.3
(3)
A 		81
(-3)
A 		279
B 320.8
(2.3)
A 		285.8
(1.4)
A 		353.1
(3)
A 		93.6
(-3)
A 		260
C 241.8
(0.5)
A 		366
(3)
A 		368.1
(3)
A 		64.6
(-3)
A 		304
avr 250
(0.6) 		315.8
(2) 		360.5
(3) 		79.7
(-3) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 229.5
(-1.4)
A 		211.9
(-1.8)
A 		199.1
(-2.1)
A 		157.2
(-3)
A 		435.7
(3)
A 		373.9
(1.7)
A 		279
B 263.5
(-0.6)
A 		241.5
(-1.2)
A 		169.7
(-3)
A 		288.5
(0.1)
A 		402.8
(3)
A 		329.8
(1.1)
P 		233
C 203.5
(-1.5)
A 		209.1
(-1.3)
A 		207
(-1.4)
A 		149.2
(-3)
A 		360.4
(3)
A 		295.8
(1.2)
M 		211
avr 232.2
(-1.8) 		220.8
(-2.2) 		191.9
(-3) 		198.3
(-2.8) 		399.6
(3) 		333.2
(1.1) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 68.2
(1.1)
A 		64.2
(0.8)
A 		94.2
(3)
A 		11.9
(-3)
A 		82
B 102.3
(3)
A 		70.6
(0.7)
A 		81.8
(1.5)
A 		19.9
(-3)
A 		82
C 80.1
(0.5)
A 		105.2
(1.8)
A 		128.3
(3)
A 		10.9
(-3)
A 		117
avr 83.5
(1.8) 		80
(1.5) 		101.4
(3) 		14.2
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 42.3
(-2.8)
A 		75.4
(-0.7)
A 		43.4
(-2.8)
A 		39.9
(-3)
A 		131.5
(3)
A 		91
(0.3)
A 		92
B 91.7
(-0.5)
A 		80.4
(-1.1)
A 		41.2
(-3)
A 		76.4
(-1.3)
A 		163.7
(3)
A 		123
(1)
P 		123
C 75.4
(0.1)
A 		63.8
(-0.7)
A 		52.7
(-1.4)
A 		30
(-3)
A 		116.6
(3)
A 		99
(1.8)
M 		87
avr 69.8
(-1.4) 		73.2
(-1.2) 		45.8
(-3) 		48.8
(-2.8) 		137.3
(3) 		104.3
(0.8) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12925
Sequence Type Exemplar sequence
Representative Public ID Y69H2.7 NCBI
Target Description Y69H2.7 /REP_DB=WormBase Gene ID /WP=CE22825 /TR=Q9U1U3 /GB=CAB63404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075247(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075247 NCBI Caenorhabditis elegans Y69H2.7 (Y69H2.7) mRNA, complete cds. 10/11 None
SNAP00000002600 ENSEMBL cdna:SNAP chromosome:CEL140:V:18687270:18703438:1 10/11 None
Y69H2.7 ENSEMBL cdna:known chromosome:CEL140:V:18692612:18698613:1 gene:Y69H2.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002608 4/11 Cross Hyb Matching Probes None
GENEFINDER00000002612 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18692637-18698541(+) 99.75 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69H2.7
Entrez Gene 180224 Entrez gene
SwissProt Q9U1U3 EMBL-EBI
WormBase CE37450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63404 Hypothetical protein Y69H2.7 [Caenorhabditis elegans] ref|NP_507648.2| Y69H2.7 [Caenorhabditis elegans] 0.0
blast CAB63404 Hypothetical protein Y69H2.7 [Caenorhabditis elegans] ref|NP_507648.2| Y69H2.7 [Caenorhabditis elegans] 1.0E-116
blast XP_795845 PREDICTED: similar to CG14692-PA [Strongylocentrotus purpuratus] 3.0E-43
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 2.0E-30
blast CAE56635 Hypothetical protein CBG24393 [Caenorhabditis briggsae] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.8E-10
Sequence
Target Sequence 
>C. ELEGANS:177665_AT
tgaagtcgctcgacgagtacgcgtcggaaaaatccaaggaaatcatcgccgccacggttt
cgtcggagaaaatcaaggaatctcctcctccagccgtcagctccgtcaaaaaggcagtga
acctcacaaagcccgtcactcaaagcatcaatatccaaaacatgactcgccaggaggccc
aaatgaaccagcacctgctcttccaaatggctccggatcgccgcttcttcgagctcgccc
agtcgacagttcactactcggaagccgagctcctgtcagcctacaaccaatacgatgagc
ccctccaacttgtgctcttttgccaaaaaactcaaagttcgcaggagctcttcgaagatg
ctcggaaatttgatccaactgagattgagctgaaaaatcttttggccgaccggttccatc
agccatatgacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGTCGCTCGACGAGTACGCGTC 298 575 212 Antisense
AATCCAAGGAAATCATCGCCGCCAC 578 167 242 Antisense
AAAATCAAGGAATCTCCTCCTCCAG 648 131 280 Antisense
CAGCCGTCAGCTCCGTCAAAAAGGC 426 203 302 Antisense
AGGCAGTGAACCTCACAAAGCCCGT 693 21 323 Antisense
AAAGCCCGTCACTCAAAGCATCAAT 62 125 339 Antisense
AAAACATGACTCGCCAGGAGGCCCA 251 131 368 Antisense
CCAAATGAACCAGCACCTGCTCTTC 592 275 390 Antisense
CCCAGTCGACAGTTCACTACTCGGA 298 259 449 Antisense
CTACAACCAATACGATGAGCCCCTC 575 225 492 Antisense
CCGGTTCCATCAGCCATATGACAAT 602 265 621 Antisense
Sequence Source Affymetrix Proprietary Database