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[177664_s_at]

Description M01F1.8 /REP_DB=WormBase Gene ID /WP=CE01035 /TR=Q21451 /GB=CAA86514.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 119.7
(-3)
A 		120.6
(-2.9)
A 		142.9
(-1.7)
A 		224.3
(3)
P 		105
B 131.6
(-1.3)
A 		82.1
(-3)
A 		172.2
(0.2)
A 		252.7
(3)
P 		171
C 153.7
(-1.6)
A 		121.3
(-3)
A 		134
(-2.4)
A 		256.9
(3)
A 		136
avr 135
(-1.8) 		108
(-3) 		149.7
(-1.2) 		244.6
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 151.4
(-2)
A 		106.9
(-3)
A 		189.9
(-1.1)
A 		167.4
(-1.6)
M 		316.2
(1.7)
P 		375.3
(3)
P 		268
B 176.6
(-2.2)
A 		138.1
(-3)
A 		147.4
(-2.8)
M 		177.5
(-2.1)
P 		414.7
(3)
P 		382.5
(2.3)
P 		277
C 103
(-3)
A 		120.8
(-2.5)
P 		178
(-1)
A 		206.1
(-0.3)
A 		316.2
(2.7)
P 		328.4
(3)
P 		225
avr 143.7
(-2.5) 		121.9
(-3) 		171.8
(-1.8) 		183.7
(-1.5) 		349
(2.7) 		362.1
(3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 43.6
(3)
A 		26.2
(-3)
A 		37.3
(0.8)
A 		32.8
(-0.7)
P 		17
B 42
(0.9)
A 		20.3
(-3)
A 		39.9
(0.5)
A 		53.9
(3)
P 		34
C 50.9
(3)
A 		34.9
(-3)
A 		46.7
(1.4)
A 		43.3
(0.1)
A 		16
avr 45.5
(3) 		27.1
(-3) 		41.3
(1.6) 		43.3
(2.3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 27.9
(-3)
A 		38
(-2.1)
A 		41.4
(-1.8)
A 		42.5
(-1.7)
M 		95.4
(3)
P 		91.4
(2.6)
P 		68
B 61.4
(-1.8)
A 		46
(-2.5)
A 		35.8
(-3)
M 		47
(-2.5)
P 		168.5
(3)
P 		142.6
(1.8)
P 		133
C 38.2
(-2.9)
A 		36.9
(-3)
P 		45.3
(-2.3)
A 		41.4
(-2.6)
A 		102.3
(2.4)
P 		109.9
(3)
P 		73
avr 42.5
(-2.8) 		40.3
(-3) 		40.8
(-3) 		43.6
(-2.8) 		122.1
(3) 		114.6
(2.4) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7165
Sequence Type Exemplar sequence
Representative Public ID M01F1.8 NCBI
Target Description M01F1.8 /REP_DB=WormBase Gene ID /WP=CE01035 /TR=Q21451 /GB=CAA86514.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027517 NCBI Caenorhabditis elegans M01F1.8a (M01F1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000008235 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3499370:3502519:-1 11/11 None
SNAP00000008225 ENSEMBL cdna:SNAP chromosome:CEL140:III:3500759:3502519:-1 9/11 None
M01F1.8a ENSEMBL cdna:known chromosome:CEL140:III:3499373:3502519:-1 gene:M01F1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175454 2 1 NM_001027517 177664_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3499459-3502519(-) 99.5 100.0
Public Domain and Genome References
Ensembl M01F1.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92392 Hypothetical protein M01F1.8a [Caenorhabditis elegans] ref|NP_001022688.1| M01F1.8a [Caenorhabditis elegans] 1.0E-180
blast T23653 hypothetical protein M01F1.8 - Caenorhabditis elegans 1.0E-178
blast CAD92392 Hypothetical protein M01F1.8a [Caenorhabditis elegans] ref|NP_001022688.1| M01F1.8a [Caenorhabditis elegans] 1.0E-153
blast T23653 hypothetical protein M01F1.8 - Caenorhabditis elegans 1.0E-151
blast CAE64950 Hypothetical protein CBG09781 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008235 1 328-350
Sequence
Target Sequence 
>C. ELEGANS:177664_S_AT
aatgtattcgtgactcgagccactgttcgtcctgacgttgagaagttgactgaaatgttt
aagccgggccaacgtgtcaaatttgttgcacgagagcaagcgccgaatgagagaggagtc
tgttggagagccgcgttggctactgatgaatatcatgatattgcgatagatgttcccaac
gctcacggccgccaaacttatcgagtaattccaaaagccggagtttgtccgccagctccc
cttcaacaacgtcctttagctcctccaaacccccaagttccgtctacttccgcttggaac
atagcccccactccaactccagtcactgtacagagacctttgagaaaaccggttactcca
caaccagttaaaagtgcatttcaagctcagaagccaccaccaatcgatggattcgactat
tttgatagttcaaaggaggcttgtgcggcgagattccggaactttgcaaacacctaccgt
aagaacaatccgaattgcattttctcgcagccttgcttcgaaggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTATTCGTGACTCGAGCCACTG 550 163 412 Antisense
GCCACTGTTCGTCCTGACGTTGAGA 273 279 430 Antisense
TAAGCCGGGCCAACGTGTCAAATTT 686 627 471 Antisense
TGGAGAGCCGCGTTGGCTACTGATG 330 547 535 Antisense
GCGATAGATGTTCCCAACGCTCACG 204 291 574 Antisense
CAAAAGCCGGAGTTTGTCCGCCAGC 341 189 623 Antisense
CTACTTCCGCTTGGAACATAGCCCC 167 225 695 Antisense
TTTCAAGCTCAGAAGCCACCACCAA 155 671 790 Antisense
GGCTTGTGCGGCGAGATTCCGGAAC 491 535 849 Antisense
GAACTTTGCAAACACCTACCGTAAG 196 311 870 Antisense
TCTCGCAGCCTTGCTTCGAAGGAGC 456 611 914 Antisense
Sequence Source Affymetrix Proprietary Database