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[177662_at]

Description ZC443.4 /REP_DB=WormBase Gene ID /WP=CE06588 /TR=Q23319 /GB=CAA99946.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 185.3
(-1.1)
P 		93
(-2.2)
A 		28.5
(-3)
A 		527.9
(3)
P 		499
B 202.7
(-0.6)
P 		42.6
(-3)
A 		87.2
(-2.3)
A 		442.1
(3)
P 		400
C 209.2
(-0.5)
P 		40.9
(-3)
A 		81.4
(-2.4)
A 		444.2
(3)
P 		403
avr 199.1
(-1) 		58.8
(-3) 		65.7
(-2.9) 		471.4
(3) 		413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 129
(-2.2)
A 		125
(-2.5)
A 		116.5
(-3)
M 		210.7
(3)
P 		155.3
(-0.5)
P 		174
(0.7)
P 		94
B 140.9
(0.2)
M 		102.8
(-3)
A 		141.8
(0.3)
A 		162.7
(2.1)
P 		162.3
(2)
P 		173.7
(3)
P 		71
C 177.7
(2.8)
M 		123.5
(-3)
P 		124.2
(-2.9)
A 		179.5
(3)
P 		176.3
(2.7)
P 		150.8
(-0.1)
P 		56
avr 149.2
(-0.1) 		117.1
(-3) 		127.5
(-2.1) 		184.3
(3) 		164.6
(1.2) 		166.2
(1.4) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 67.5
(2.2)
P 		20.2
(-1.9)
A 		7.5
(-3)
A 		77.3
(3)
P 		70
B 64.6
(0.9)
P 		10.5
(-3)
A 		20.2
(-2.3)
A 		94.2
(3)
P 		84
C 69.3
(2.5)
P 		11.8
(-3)
A 		28.4
(-1.4)
A 		74.9
(3)
P 		63
avr 67.1
(1.7) 		14.2
(-3) 		18.7
(-2.6) 		82.1
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 23.8
(-3)
A 		44.5
(1.2)
A 		25.4
(-2.7)
M 		53.4
(3)
P 		46.9
(1.7)
P 		42.4
(0.8)
P 		30
B 49
(-0.2)
M 		34.2
(-3)
A 		34.4
(-3)
A 		43.1
(-1.3)
P 		65.9
(3)
P 		64.8
(2.8)
P 		32
C 65.9
(3)
M 		37.7
(-1.9)
P 		31.6
(-3)
A 		36.1
(-2.2)
P 		57
(1.4)
P 		50.5
(0.3)
P 		34
avr 46.2
(0.6) 		38.8
(-1.1) 		30.5
(-3) 		44.2
(0.1) 		56.6
(3) 		52.6
(2.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12957
Sequence Type Exemplar sequence
Representative Public ID ZC443.4 NCBI
Target Description ZC443.4 /REP_DB=WormBase Gene ID /WP=CE06588 /TR=Q23319 /GB=CAA99946.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073807 NCBI Caenorhabditis elegans ZC443.4 (ZC443.4) mRNA, complete cds. 11/11 None
SNAP00000030945 ENSEMBL cdna:SNAP chromosome:CEL140:V:12819967:12821634:-1 11/11 None
GENEFINDER00000030952 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12819967:12821634:-1 11/11 None
ZC443.4 ENSEMBL cdna:known chromosome:CEL140:V:12819510:12822131:-1 gene:ZC443.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12819966-12821634(-) 92.05 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC443.4
Entrez Gene 191170 Entrez gene
SwissProt Q23319 EMBL-EBI
WormBase CE06588 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99946 Hypothetical protein ZC443.4 [Caenorhabditis elegans] ref|NP_506208.1| ZC443.4 [Caenorhabditis elegans] 1.0E-180
blast CAE64005 Hypothetical protein CBG08600 [Caenorhabditis briggsae] 1.0E-102
blast CAE64004 Hypothetical protein CBG08598 [Caenorhabditis briggsae] 2.0E-22
Sequence
Target Sequence 
>C. ELEGANS:177662_AT
gattcctggagaaggcccaattcctgagagagctacaaaagtatactacaatgctgtgaa
aagtgttcaagctccaactcctgagcaggctccggtggcacaagatgttgtggtcaatga
actttcagaggttaaaaaatactgcgaaattctgaaggctcaaatggaagaagctgaaaa
gagacgagaggaagatgacgtggctaacaagctcaatgaagtcgtcgagaagctcatctc
aacagctaaggattctggaaagagtcaaaaagaggatgaagaggaagaagacgatgatga
cgatgatgatgaggaggaggaggaaaatgttgaagatgatgagaatttggaagatgatga
agatgatagaacagaagatcaaagctcaattagatgcagacagtcggagtctgaaaatat
taatttcccagatttccaatcttgtaatatcactgaagatcagaaacaagcaattatgag
aatccttctgggaaaatctgaagaagaaaaagtagaagccatggaagttactcaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCTGGAGAAGGCCCAATTCCT 84 433 555 Antisense
TCAAGCTCCAACTCCTGAGCAGGCT 527 631 621 Antisense
CAGGCTCCGGTGGCACAAGATGTTG 326 209 640 Antisense
GATGTTGTGGTCAATGAACTTTCAG 79 411 658 Antisense
GATGACGTGGCTAACAAGCTCAATG 15 413 748 Antisense
TCGTCGAGAAGCTCATCTCAACAGC 126 605 776 Antisense
GCTCATCTCAACAGCTAAGGATTCT 52 301 786 Antisense
AGCTCAATTAGATGCAGACAGTCGG 693 77 937 Antisense
GATTTCCAATCTTGTAATATCACTG 453 427 985 Antisense
GAGAATCCTTCTGGGAAAATCTGAA 545 391 1032 Antisense
GAAGCCATGGAAGTTACTCAAGAGC 462 345 1069 Antisense
Sequence Source Affymetrix Proprietary Database