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[177661_at]

Description F56H6.7 /REP_DB=WormBase Gene ID /WP=CE25915 /TR=O45585 /GB=CAB04496.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 34
(-3)
A 		41
(-2.4)
A 		52.2
(-1.4)
A 		103.5
(3)
A 		70
B 42.1
(-3)
A 		52.1
(0.5)
A 		46.5
(-1.5)
A 		59.4
(3)
A 		17
C 26.9
(-3)
A 		62.2
(-0.8)
A 		35.2
(-2.5)
A 		123.4
(3)
A 		97
avr 34.3
(-3) 		51.8
(-1.3) 		44.6
(-2) 		95.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 54.6
(3)
A 		35.1
(0.1)
A 		14.8
(-3)
A 		40.6
(0.9)
A 		50.8
(2.4)
A 		25.7
(-1.4)
A 		40
B 37.5
(1)
A 		25.1
(-1.4)
A 		17.3
(-3)
A 		47.4
(3)
A 		24.5
(-1.6)
A 		24.5
(-1.6)
A 		30
C 68.4
(3)
A 		52
(0.7)
A 		43.1
(-0.6)
A 		52
(0.7)
A 		26.3
(-3)
A 		46.4
(-0.1)
A 		42
avr 53.5
(3) 		37.4
(-0.4) 		25.1
(-3) 		46.7
(1.6) 		33.9
(-1.1) 		32.2
(-1.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.4
(0.4)
A 		8.9
(-3)
A 		13.7
(1.6)
A 		15.1
(3)
A 		6
B 13.4
(3)
A 		12.9
(1.8)
A 		10.8
(-3)
A 		12.7
(1.4)
A 		3
C 8.9
(-3)
A 		17.9
(1.5)
A 		12.3
(-1.3)
A 		20.8
(3)
A 		12
avr 11.6
(-3) 		13.2
(-0.9) 		12.3
(-2.1) 		16.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.1
(0.4)
A 		12.5
(1.6)
A 		3.2
(-3)
A 		10.3
(0.5)
A 		15.3
(3)
A 		6.3
(-1.5)
A 		12
B 13
(3)
A 		8.4
(-0.1)
A 		4.2
(-3)
A 		12.5
(2.7)
A 		10
(1)
A 		9.1
(0.3)
A 		9
C 25.3
(3)
A 		15.9
(-0.4)
A 		11
(-2.1)
A 		10.5
(-2.3)
A 		8.5
(-3)
A 		15.5
(-0.5)
A 		17
avr 16.1
(3) 		12.3
(0.7) 		6.1
(-3) 		11.1
(-0) 		11.3
(0.1) 		10.3
(-0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177661_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1886
Sequence Type Exemplar sequence
Representative Public ID F56H6.7 NCBI
Target Description F56H6.7 /REP_DB=WormBase Gene ID /WP=CE25915 /TR=O45585 /GB=CAB04496.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060707 NCBI Caenorhabditis elegans F56H6.7 (F56H6.7) mRNA, complete cds. 11/11 None
SNAP00000044657 ENSEMBL cdna:SNAP chromosome:CEL140:I:12305856:12308939:1 11/11 None
GENEFINDER00000044672 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12305856:12308939:1 11/11 None
F56H6.7 ENSEMBL cdna:known chromosome:CEL140:I:12305856:12308939:1 gene:F56H6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12305786-12308870(+) 98.55 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.7
Entrez Gene 186418 Entrez gene
SwissProt O45585 EMBL-EBI
WormBase CE38376 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251630_AT expressed protein at
Protein Similarities
Method ID Description E-Value
blast CAB04496 Hypothetical protein F56H6.7 [Caenorhabditis elegans] ref|NP_493108.2| F56H6.7 [Caenorhabditis elegans] 0.0
blast CAB04498 Hypothetical protein F56H6.9 [Caenorhabditis elegans] ref|NP_493110.2| F56H6.9 [Caenorhabditis elegans] 0.0
blast CAB04026 Hypothetical protein E03H4.4 [Caenorhabditis elegans] ref|NP_493147.2| E03H4.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493108.2 1 5-27
F56H6.7 1 5-27
SNAP00000044657 1 5-27
GENEFINDER00000044672 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:177661_AT
tatctggcagcgaatcgactactcgagagttcatcacttacacggctcgactaactttta
taacagttggtctccaactgaatatggaatacaagccgccaaaaaaataatagaaaccgt
gaaagcatctactgatccaaaagttctcacgacttggaaaaaatttgacaatggcctgaa
gcaatttgcatatcacaatattacggatggtggagaggcccaactttcgagcactcatgg
aaaaagtatttcggatttctactacataccttcaactgaaatcgactactatgcggacct
aatgagaatcttctacgacggcggactatttttggagaccgctgtaaaccgattcttaag
atccgttgatcatcaaacgtccctcgccggatcatccagctacctttgggatgacaatcg
ggctcggtggcctaaattctacaataaggatcttgtaggcttgcatcctattaagccaag
caagtttggatatccaggagaagaacgaaaagcatactgcgccacagtcatccaaacatg
gtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTGGCAGCGAATCGACTACTCG 164 655 1875 Antisense
GAGAGTTCATCACTTACACGGCTCG 408 395 1899 Antisense
TACACGGCTCGACTAACTTTTATAA 683 631 1913 Antisense
GCCCAACTTTCGAGCACTCATGGAA 382 287 2092 Antisense
GGATTTCTACTACATACCTTCAACT 418 509 2127 Antisense
AATCGACTACTATGCGGACCTAATG 68 169 2154 Antisense
ATCTTCTACGACGGCGGACTATTTT 420 31 2182 Antisense
GGAGACCGCTGTAAACCGATTCTTA 395 517 2208 Antisense
TCCGTTGATCATCAAACGTCCCTCG 503 593 2236 Antisense
TGACAATCGGGCTCGGTGGCCTAAA 525 557 2286 Antisense
GCGCCACAGTCATCCAAACATGGTC 644 287 2393 Antisense
Sequence Source Affymetrix Proprietary Database