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[177660_at]

Description ZK596.1 /REP_DB=WormBase Gene ID /WP=CE06631 /TR=Q23545 /GB=CAA93430.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3141
1 2 3 4 range
A 3419.7
(3)
P 		1201.5
(-1.3)
P 		681
(-2.3)
P 		323.1
(-3)
P 		3097
B 2984.5
(3)
P 		1143.8
(-1.3)
P 		667.9
(-2.4)
P 		426.6
(-3)
P 		2558
C 3463.7
(3)
P 		1126.2
(-1.5)
P 		706.7
(-2.3)
P 		351.9
(-3)
P 		3112
avr 3289.3
(3) 		1157.2
(-1.4) 		685.2
(-2.3) 		367.2
(-3) 		2922

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2123
1 2 3 4 5 6 range
A 2067.5
(3)
P 		1431.8
(0.5)
P 		1523.3
(0.8)
P 		1723.9
(1.6)
P 		969.4
(-1.4)
P 		554.5
(-3)
P 		1513
B 2239.1
(3)
P 		1163.5
(-0.6)
P 		1850.1
(1.7)
P 		1744.8
(1.3)
P 		1090.1
(-0.8)
P 		446
(-3)
P 		1793
C 2556.7
(3)
P 		1233.2
(-0.7)
P 		1813.3
(0.9)
P 		1657.5
(0.5)
P 		1097.7
(-1.1)
P 		433.4
(-3)
P 		2123
avr 2287.8
(3) 		1276.2
(-0.4) 		1728.9
(1.1) 		1708.7
(1.1) 		1052.4
(-1.1) 		478
(-3) 		1810
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1198
1 2 3 4 range
A 1245.1
(3)
P 		260.8
(-1.9)
P 		178
(-2.3)
P 		47.3
(-3)
P 		1198
B 951.7
(3)
P 		282.5
(-1.7)
P 		154.8
(-2.6)
P 		90.9
(-3)
P 		861
C 1146.6
(3)
P 		323.8
(-1.5)
P 		246.3
(-2)
P 		59.3
(-3)
P 		1087
avr 1114.5
(3) 		289
(-1.7) 		193
(-2.3) 		65.8
(-3) 		1049

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 381.1
(0.9)
P 		509.2
(3)
P 		331.7
(0.2)
P 		437.2
(1.8)
P 		292.5
(-0.5)
P 		135
(-3)
P 		374
B 779.1
(3)
P 		387.3
(-0.8)
P 		449.3
(-0.2)
P 		462.1
(-0.1)
P 		442.9
(-0.3)
P 		166.3
(-3)
P 		613
C 947.6
(3)
P 		376.3
(-1.3)
P 		461.5
(-0.6)
P 		333.3
(-1.6)
P 		355.2
(-1.4)
P 		145.1
(-3)
P 		803
avr 702.6
(3) 		424.3
(-0) 		414.2
(-0.1) 		410.9
(-0.2) 		363.5
(-0.7) 		148.8
(-3) 		554
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8745
Sequence Type Exemplar sequence
Representative Public ID ZK596.1 NCBI
Target Description ZK596.1 /REP_DB=WormBase Gene ID /WP=CE06631 /TR=Q23545 /GB=CAA93430.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069625 NCBI Caenorhabditis elegans ZK596.1 (ZK596.1) mRNA, complete cds. 11/11 None
SNAP00000015316 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10900362:10901293:1 11/11 None
GENEFINDER00000015321 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10900362:10901293:1 11/11 None
ZK596.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:10900342:10901754:1 gene:ZK596.1 11/11 None
ZK596.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:10900344:10901341:1 gene:ZK596.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10900367-10901299(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK596.1
Entrez Gene 177982 Entrez gene
SwissProt Q23545 EMBL-EBI
WormBase CE06631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93430 Hypothetical protein ZK596.1 [Caenorhabditis elegans] ref|NP_502026.1| ZK596.1 [Caenorhabditis elegans] 2.0E-71
blast CAE61954 Hypothetical protein CBG05953 [Caenorhabditis briggsae] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 6.3E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502026.1 1 2-24
ZK596.1.1 1 2-24
ZK596.1.2 1 2-24
SNAP00000015316 1 2-24
GENEFINDER00000015321 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:177660_AT
agcattcttcgctattgtgagcaacactagcttgactatttctgaaactgaatctcaaat
ctcttcatgggcacaaacttatggagtatcgagccaagtaaccgaattccaaaccaaggt
agaagaaaaacttaacgagatcaagcagaacgtgactgccgtcatcaataacctttccac
agttgaaactcaacttgaggccatcttcgccaacaaatctcaaactattcgtgagcaatt
ccaagctcttggacaacttaaggaccaatacccacaagaagtcggagttcttcttttcct
tgccaagccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATTCTTCGCTATTGTGAGCAAC 131 79 168 Antisense
GAGCAACACTAGCTTGACTATTTCT 660 389 186 Antisense
TCTCAAATCTCTTCATGGGCACAAA 27 613 220 Antisense
AGCAGAACGTGACTGCCGTCATCAA 389 77 311 Antisense
CCGTCATCAATAACCTTTCCACAGT 653 263 326 Antisense
AACTCAACTTGAGGCCATCTTCGCC 269 141 354 Antisense
CATCTTCGCCAACAAATCTCAAACT 393 213 369 Antisense
AAACTATTCGTGAGCAATTCCAAGC 131 127 389 Antisense
GACAACTTAAGGACCAATACCCACA 566 363 419 Antisense
GAAGTCGGAGTTCTTCTTTTCCTTG 484 181 445 Antisense
TCTTCTTTTCCTTGCCAAGCCAAAA 684 615 456 Antisense
Sequence Source Affymetrix Proprietary Database