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[177659_at] 7TM chemoreceptor, sri family

Description F36G9.8 /REP_DB=WormBase Gene ID /WP=CE15985 /TR=O45476 /GB=CAB04337.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 03      6grp_cgc > 64      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 50.1
(-2.7)
A 		39.4
(-3)
A 		62.6
(-2.4)
A 		263.7
(3)
P 		224
B 55.3
(-1.2)
A 		16.4
(-3)
A 		42.5
(-1.8)
A 		148.1
(3)
P 		132
C 59.6
(-2.3)
A 		40.5
(-2.8)
A 		33.3
(-3)
A 		248.8
(3)
P 		216
avr 55
(-2.3) 		32.1
(-3) 		46.1
(-2.6) 		220.2
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 82.3
(3)
A 		9.7
(-3)
A 		66.3
(1.7)
A 		32.5
(-1.1)
A 		80.8
(2.9)
P 		50
(0.3)
A 		73
B 19.9
(-3)
A 		56.2
(1.5)
A 		45.2
(0.2)
A 		21
(-2.9)
A 		66.5
(2.8)
A 		67.9
(3)
P 		48
C 12.1
(-2.8)
A 		95.9
(3)
P 		9.9
(-3)
A 		89.2
(2.5)
A 		17.6
(-2.5)
A 		11
(-2.9)
A 		86
avr 38.1
(-3) 		53.9
(2.6) 		40.5
(-2.1) 		47.6
(0.4) 		55
(3) 		43
(-1.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 18.2
(-1.1)
A 		8.5
(-3)
A 		16.4
(-1.4)
A 		38.6
(3)
P 		30
B 17.6
(-0.1)
A 		4.1
(-3)
A 		9.8
(-1.8)
A 		31.6
(3)
P 		28
C 19.7
(-1.4)
A 		11.6
(-3)
A 		11.6
(-3)
A 		42
(3)
P 		30
avr 18.5
(-0.9) 		8.1
(-3) 		12.6
(-2.1) 		37.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.2
(0.4)
A 		3.4
(-3)
A 		14.4
(0.1)
A 		8.2
(-1.6)
A 		24.4
(3)
P 		12.2
(-0.5)
A 		21
B 6.9
(-2.6)
A 		18.7
(0.7)
A 		11
(-1.5)
A 		5.6
(-3)
A 		27
(3)
A 		25.3
(2.5)
P 		21
C 4.5
(-2.6)
A 		29.3
(3)
P 		2.5
(-3)
A 		17.9
(0.4)
A 		5.7
(-2.3)
A 		3.7
(-2.7)
A 		27
avr 8.9
(-3) 		17.1
(1.9) 		9.3
(-2.8) 		10.6
(-2) 		19
(3) 		13.7
(-0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14014
Sequence Type Exemplar sequence
Representative Public ID F36G9.8 NCBI
Target Description F36G9.8 /REP_DB=WormBase Gene ID /WP=CE15985 /TR=O45476 /GB=CAB04337.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074601 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-1) (sri-1) mRNA, complete cds. 11/11 None
GENEFINDER00000043441 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15967950:15972336:-1 11/11 None
F36G9.8 ENSEMBL cdna:known chromosome:CEL140:V:15968828:15970225:-1 gene:F36G9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043425 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15968827-15970225(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-1
Ensembl F36G9.8
Entrez Gene 185371 Entrez gene
SwissProt O45476 EMBL-EBI
WormBase CE15985 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04337 Hypothetical protein F36G9.8 [Caenorhabditis elegans] ref|NP_507002.1| Serpentine Receptor, class I family member (sri-1) [Caenorhabditis elegans] 0.0
blast CAB04338 Hypothetical protein F36G9.7 [Caenorhabditis elegans] ref|NP_507003.1| F36G9.7 [Caenorhabditis elegans] 1.0E-149
blast CAB04337 Hypothetical protein F36G9.8 [Caenorhabditis elegans] ref|NP_507002.1| Serpentine Receptor, class I family member (sri-1) [Caenorhabditis elegans] 1.0E-141
blast CAB04339 Hypothetical protein F36G9.9 [Caenorhabditis elegans] ref|NP_507001.1| Serpentine Receptor, class I family member (sri-2) [Caenorhabditis elegans] 1.0E-125
blast CAE61117 Hypothetical protein CBG04874 [Caenorhabditis briggsae] 1.0E-119
blast CAB04339 Hypothetical protein F36G9.9 [Caenorhabditis elegans] ref|NP_507001.1| Serpentine Receptor, class I family member (sri-2) [Caenorhabditis elegans] 9.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-98
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507002.1 7 15-34,60-82,97-119,135-157,197-219,247-269,279-301
F36G9.8 7 15-34,60-82,97-119,135-157,197-219,247-269,279-301
GENEFINDER00000043441 11 40-62,74-96,146-168,178-197,209-231,251-273,301-323,338-360,398-420,450-472,479-501
Sequence
Target Sequence 
>C. ELEGANS:177659_AT
gattacactgatgcttctcatgttcaagttggcaatacccgatcaaaaaactgctagagc
acagtttatcgagctttacccggatctccagtatctagtggctagtaagcatgtgttcat
agtatgcgtagttgtcgaaactattcatgtcatattcttatgcctgtgcgtttttcgaat
cggaattggtggcacaattgcaatagtgctcatttggatgtcaagtagagctttgaaatc
tgttcagctatcgccaaccactcggaggatacatttgcagttgataaggagtttgtgtta
tcagatagctgtgccaattttagcattctacatacctatcataagtttggttgttccttt
gatatttactattcccaactcgcaaacgtcgtacttcatttctctactttgcatgtctac
gcatacttttttgggtacattaagcatgttatacttcaatcgtcattatcgtcaatggtt
gtgcagcattatcagatctcggaaatttagcacttctttgccaacgtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACACTGATGCTTCTCATGTTC 113 431 459 Antisense
GCACAGTTTATCGAGCTTTACCCGG 630 313 517 Antisense
CTTTACCCGGATCTCCAGTATCTAG 672 219 532 Antisense
ATGCCTGTGCGTTTTTCGAATCGGA 477 39 618 Antisense
TGAAATCTGTTCAGCTATCGCCAAC 204 573 692 Antisense
ATCGCCAACCACTCGGAGGATACAT 364 37 708 Antisense
TATTTACTATTCCCAACTCGCAAAC 545 659 821 Antisense
AAACGTCGTACTTCATTTCTCTACT 285 127 842 Antisense
TCTCTACTTTGCATGTCTACGCATA 218 613 859 Antisense
GTTGTGCAGCATTATCAGATCTCGG 608 435 936 Antisense
TTTAGCACTTCTTTGCCAACGTCTA 409 613 964 Antisense
Sequence Source Affymetrix Proprietary Database