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[177658_at]

Description F46C3.2 /REP_DB=WormBase Gene ID /WP=CE03341 /TR=Q20457 /GB=CAA91468.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 72      4grp_total > 03      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 103.6
(-2.2)
P 		92.5
(-3)
P 		101.7
(-2.3)
P 		173.3
(3)
P 		81
B 85.3
(-1.2)
P 		79.1
(-1.9)
P 		69.7
(-3)
P 		120.3
(3)
P 		51
C 80.2
(-1.9)
P 		56.7
(-3)
P 		63.8
(-2.7)
P 		184.7
(3)
P 		128
avr 89.7
(-2) 		76.1
(-3) 		78.4
(-2.8) 		159.4
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 62.7
(-2.4)
P 		103.2
(-1.1)
P 		222.5
(3)
P 		160.4
(0.9)
P 		175.4
(1.4)
P 		46.2
(-3)
P 		176
B 83.5
(-2.4)
P 		129.7
(0.8)
P 		161.2
(3)
P 		140.8
(1.6)
P 		157.2
(2.7)
P 		74.1
(-3)
P 		87
C 91.7
(-0.6)
P 		178.6
(3)
P 		115.1
(0.4)
P 		125.5
(0.8)
P 		120.4
(0.6)
P 		32.3
(-3)
P 		146
avr 79.3
(-1.5) 		137.2
(1.5) 		166.3
(3) 		142.2
(1.7) 		151
(2.2) 		50.9
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 37.7
(3)
P 		20.1
(-3)
P 		26.6
(-0.8)
P 		25.4
(-1.2)
P 		18
B 27.2
(3)
P 		19.5
(-1.2)
P 		16.2
(-3)
P 		25.6
(2.1)
P 		11
C 26.6
(1.2)
P 		16.3
(-3)
P 		22.2
(-0.6)
P 		31.1
(3)
P 		15
avr 30.5
(3) 		18.6
(-3) 		21.7
(-1.4) 		27.4
(1.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 11.6
(-3)
P 		36.7
(0.7)
P 		48.4
(2.4)
P 		40.7
(1.2)
P 		52.9
(3)
P 		11.3
(-3)
P 		42
B 29
(-2.8)
P 		43.2
(-0.4)
P 		39.1
(-1.1)
P 		37.3
(-1.4)
P 		63.9
(3)
P 		27.6
(-3)
P 		36
C 34
(0.2)
P 		54.5
(3)
P 		29.3
(-0.5)
P 		25.2
(-1)
P 		39
(0.9)
P 		10.8
(-3)
P 		44
avr 24.9
(-1.6) 		44.8
(1.8) 		38.9
(0.8) 		34.4
(0) 		51.9
(3) 		16.6
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16373
Sequence Type Exemplar sequence
Representative Public ID F46C3.2 NCBI
Target Description F46C3.2 /REP_DB=WormBase Gene ID /WP=CE03341 /TR=Q20457 /GB=CAA91468.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077512 NCBI Caenorhabditis elegans F46C3.2 (F46C3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000002002 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11416668:11418583:-1 11/11 None
F46C3.2 ENSEMBL cdna:known chromosome:CEL140:X:11416668:11418271:-1 gene:F46C3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001993 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11416667-11418271(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46C3.2
Entrez Gene 185843 Entrez gene
SwissProt Q20457 EMBL-EBI
WormBase CE03341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE70638 Hypothetical protein CBG17339 [Caenorhabditis briggsae] 0.0
blast CAA91468 Hypothetical protein F46C3.2 [Caenorhabditis elegans] ref|NP_509913.1| F46C3.2 [Caenorhabditis elegans] 1.0E-176
blast CAA91468 Hypothetical protein F46C3.2 [Caenorhabditis elegans] ref|NP_509913.1| F46C3.2 [Caenorhabditis elegans] 1.0E-158
blast CAE70638 Hypothetical protein CBG17339 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509913.1 4 140-162,177-199,239-261,266-288
F46C3.2 4 140-162,177-199,239-261,266-288
GENEFINDER00000002002 4 192-214,229-251,291-313,318-340
Sequence
Target Sequence 
>C. ELEGANS:177658_AT
tgaaacattactcatctgcttcttttgacaaccattatcgtgcagatttgaaagttcgat
ctctaactgctgcaagatacactatgccaatttggtacacattgtttttttcattcatga
ctctggcaacatttgcctcgcatatttggtcccaagtcacaaattactcagatttacaag
agacgctttcaatgactctaccgacaattattctagtggtttcaagtcttctcattggca
tgctactttatttcaacgtctatatggttggttttttatgttgttgtgagaataactttt
caatgagactagtaacaaaggatttggattattcgtctctttatgtacatttttgcgagc
taaacaaatttgatctgaggatatattttgtgaaaggattgcagtttattcttctttggt
acactatgcttttggctgtttatgcccatgagcatgatttaaacatttatccagctttag
tttgtgttttaacaaatggatttggactgatgttatttgcaagaatggccgaattcttcc
gacggtgtagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACATTACTCATCTGCTTCTTT 385 573 347 Antisense
GAAAGTTCGATCTCTAACTGCTGCA 166 361 396 Antisense
GACTCTGGCAACATTTGCCTCGCAT 119 375 465 Antisense
GCCTCGCATATTTGGTCCCAAGTCA 501 281 481 Antisense
CGCTTTCAATGACTCTACCGACAAT 655 253 530 Antisense
TCAAGTCTTCTCATTGGCATGCTAC 120 633 568 Antisense
GGCATGCTACTTTATTTCAACGTCT 139 537 583 Antisense
GATTTGGATTATTCGTCTCTTTATG 172 427 667 Antisense
TGCAGTTTATTCTTCTTTGGTACAC 420 577 746 Antisense
GGTACACTATGCTTTTGGCTGTTTA 265 505 764 Antisense
GCCGAATTCTTCCGACGGTGTAGAA 175 285 874 Antisense
Sequence Source Affymetrix Proprietary Database