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[177657_at] 7TM receptor, srbc family

Description ZC455.8 /REP_DB=WormBase Gene ID /WP=CE06597 /TR=Q23340 /GB=CAA99961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 05      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 4.8
(-3)
A 		4.7
(-3)
A 		19.2
(-1.8)
A 		76.8
(3)
P 		72
B 36
(3)
A 		1.8
(-3)
A 		6
(-2.3)
A 		25
(1.1)
A 		34
C 21.9
(-0.2)
A 		2.6
(-3)
A 		3.3
(-2.9)
A 		44.6
(3)
P 		42
avr 20.9
(-0.7) 		3
(-3) 		9.5
(-2.1) 		48.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.7
(-2)
A 		1.6
(-3)
A 		3.6
(-2.5)
A 		25.4
(3)
A 		3.2
(-2.6)
A 		3.4
(-2.5)
A 		24
B 5.1
(-1.1)
A 		8.1
(0.2)
A 		14.5
(3)
A 		6.4
(-0.5)
A 		2.5
(-2.3)
A 		0.8
(-3)
A 		14
C 3.4
(-2.3)
A 		16.5
(3)
A 		5
(-1.6)
A 		3.5
(-2.2)
A 		4.4
(-1.9)
A 		1.6
(-3)
A 		15
avr 4.7
(-1.3) 		8.7
(1.1) 		7.7
(0.5) 		11.8
(3) 		3.4
(-2.1) 		1.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-2.6)
A 		1
(-3)
A 		5
(-0.6)
A 		11.2
(3)
P 		10
B 11.5
(3)
A 		0.4
(-3)
A 		1.4
(-2.5)
A 		5.3
(-0.4)
A 		11
C 7.3
(2.8)
A 		0.7
(-3)
A 		1.1
(-2.6)
A 		7.5
(3)
P 		7
avr 6.8
(2) 		0.7
(-3) 		2.5
(-1.5) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		6.4
(3)
A 		1
(-2.6)
A 		0.8
(-2.8)
A 		6
B 1.8
(-0.2)
A 		2.7
(1.5)
A 		3.5
(3)
A 		1.7
(-0.4)
A 		1
(-1.7)
A 		0.3
(-3)
A 		3
C 1.3
(-1.9)
A 		5
(3)
A 		1.3
(-1.9)
A 		0.7
(-2.7)
A 		1.4
(-1.8)
A 		0.5
(-3)
A 		5
avr 1.4
(-0.8) 		2.8
(2.8) 		1.9
(0.5) 		2.9
(3) 		1.1
(-1.5) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177657_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14009
Sequence Type Exemplar sequence
Representative Public ID ZC455.8 NCBI
Target Description ZC455.8 /REP_DB=WormBase Gene ID /WP=CE06597 /TR=Q23340 /GB=CAA99961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073798 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-43) (srbc-43) mRNA, complete cds. 11/11 None
GENEFINDER00000034480 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12791787:12803621:-1 11/11 None
ZC455.8 ENSEMBL cdna:known chromosome:CEL140:V:12791787:12793108:-1 gene:ZC455.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12791786-12793108(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-43
Ensembl ZC455.8
Entrez Gene 191176 Entrez gene
SwissProt Q23340 EMBL-EBI
WormBase CE06597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99957 Hypothetical protein ZC455.6a [Caenorhabditis elegans] ref|NP_506200.1| ZC455.6a [Caenorhabditis elegans] 0.0
blast CAA99956 Hypothetical protein ZC455.5 [Caenorhabditis elegans] ref|NP_506201.1| ZC455.5 [Caenorhabditis elegans] 0.0
blast CAA99954 Hypothetical protein ZC455.3 [Caenorhabditis elegans] ref|NP_506203.1| ZC455.3 [Caenorhabditis elegans] 0.0
blast CAA99961 Hypothetical protein ZC455.8 [Caenorhabditis elegans] ref|NP_506199.1| Serpentine Receptor, class BC (class B-like) family member (srbc-43) [Caenorhabditis elegans] 1.0E-170
blast CAE63998 Hypothetical protein CBG08592 [Caenorhabditis briggsae] 1.0E-129
blast CAA99960 Hypothetical protein ZC455.9 [Caenorhabditis elegans] ref|NP_506198.1| Serpentine Receptor, class BC (class B-like) family member (srbc-44) [Caenorhabditis elegans] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.8E-81
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.5E-67
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-21
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.2E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506199.1 7 10-32,52-74,84-106,127-149,173-195,216-238,253-271
ZC455.8 7 10-32,52-74,84-106,127-149,173-195,216-238,253-271
GENEFINDER00000034480 9 488-510,517-539,1372-1394,1840-1859,1874-1893,1906-1928,1959-1981,1997-2019,2034-2052
Sequence
Target Sequence 
>C. ELEGANS:177657_AT
ctcaaccaggtttttcttgggagctttaatttcaattgagcggctcattgctgtattttt
acctgtcaaattccataataatcgacagaaaatatcaattttcacattttttattatgtt
agtattgtggggaatgctggaagatgttatgtatttttgggtttgcaatatttctccatt
tgaaaaaacttgctcaattttggggtgcacttggaatgattgttttttgcaatactggac
tggaaacaaacttataattggtttatttacatgcatgagttctttgattctattcgtaaa
acttttatcactgaaaaaagcaatgaatctgaataatgatctgtcaaaaacgaattactt
atgcatcggcgacgcgtgcctaactcttatatttgacttttcaccttttctggtgacact
cattttcaaaactcaacttttgtcagcagacatctatgggccatacaatgctactgcgaa
aagtcttgcatgttttattgatgctgtaattgcagctatcgtgttgaaaataccatcaaa
aataaattctataaagagtgtaaatccgcgtagtggaatcacttccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAACCAGGTTTTTCTTGGGAGCT 84 227 300 Antisense
GCGGCTCATTGCTGTATTTTTACCT 605 291 339 Antisense
GGGTTTGCAATATTTCTCCATTTGA 222 497 458 Antisense
CTTGCTCAATTTTGGGGTGCACTTG 410 219 488 Antisense
GCATGAGTTCTTTGATTCTATTCGT 246 311 572 Antisense
TTACTTATGCATCGGCGACGCGTGC 11 659 654 Antisense
CGCGTGCCTAACTCTTATATTTGAC 346 253 672 Antisense
ATATTTGACTTTTCACCTTTTCTGG 201 19 688 Antisense
ACCTTTTCTGGTGACACTCATTTTC 347 85 702 Antisense
ATGGGCCATACAATGCTACTGCGAA 700 49 755 Antisense
TCCGCGTAGTGGAATCACTTCCGAC 364 595 864 Antisense
Sequence Source Affymetrix Proprietary Database