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[177656_at]

Description C43D7.7 /REP_DB=WormBase Gene ID /WP=CE18551 /TR=Q9XVC0 /GB=CAB03960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 7.4
(-0.6)
A 		3.3
(-2.4)
A 		1.8
(-3)
A 		15.8
(3)
A 		14
B 19.4
(1.1)
A 		22.7
(3)
A 		13.9
(-1.9)
A 		12
(-3)
A 		11
C 9.3
(-0.7)
A 		14.1
(0.9)
A 		2.3
(-3)
A 		20.5
(3)
A 		18
avr 12
(0.6) 		13.4
(1.4) 		6
(-3) 		16.1
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.1
(-2.6)
A 		12.5
(-2.2)
A 		13.2
(-2)
A 		32.3
(3)
A 		11.4
(-2.5)
A 		9.6
(-3)
A 		23
B 1.5
(-2.9)
A 		3
(-2.5)
A 		24.2
(3)
A 		8.8
(-1)
A 		7.6
(-1.3)
A 		1
(-3)
A 		23
C 4.5
(1.2)
A 		4.8
(1.6)
A 		3.3
(-0.3)
A 		5.9
(3)
A 		5.5
(2.5)
A 		1.2
(-3)
A 		5
avr 5.7
(-2.1) 		6.8
(-1.5) 		13.6
(1.9) 		15.7
(3) 		8.2
(-0.8) 		3.9
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.7
(3)
A 		0.7
(-2.5)
A 		0.5
(-3)
A 		2.3
(1.9)
A 		2
B 6.2
(3)
A 		5.6
(2)
A 		3.2
(-2)
A 		2.6
(-3)
A 		4
C 3.1
(1.3)
A 		4
(3)
A 		0.8
(-3)
A 		3.5
(2.1)
A 		3
avr 4
(3) 		3.4
(1.6) 		1.5
(-3) 		2.8
(0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-3)
A 		4.4
(-0.7)
A 		2.9
(-2.2)
A 		8.2
(3)
A 		3.5
(-1.6)
A 		2.3
(-2.8)
A 		6
B 0.5
(-2.9)
A 		1
(-2.3)
A 		5.9
(3)
A 		2.3
(-0.9)
A 		3.1
(-0.1)
A 		0.4
(-3)
A 		6
C 1.7
(2.6)
A 		1.5
(1.7)
A 		0.8
(-1.3)
A 		1.2
(0.4)
A 		1.8
(3)
A 		0.4
(-3)
A 		1
avr 1.4
(-2.2) 		2.3
(-0.3) 		3.2
(1.6) 		3.9
(3) 		2.8
(0.7) 		1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13996
Sequence Type Exemplar sequence
Representative Public ID C43D7.7 NCBI
Target Description C43D7.7 /REP_DB=WormBase Gene ID /WP=CE18551 /TR=Q9XVC0 /GB=CAB03960.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075362 NCBI Caenorhabditis elegans C43D7.7 (C43D7.7) mRNA, complete cds. 11/11 None
C43D7.7 ENSEMBL cdna:known chromosome:CEL140:V:19321606:19322033:-1 gene:C43D7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19321605-19322033(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43D7.7
Entrez Gene 183412 Entrez gene
SwissProt Q9XVC0 EMBL-EBI
WormBase CE18551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03960 Hypothetical protein C43D7.7 [Caenorhabditis elegans] ref|NP_507763.1| C43D7.7 [Caenorhabditis elegans] 2.0E-50
blast CAI79262 Hypothetical protein ZK228.10 [Caenorhabditis elegans] ref|NP_001024307.1| ZK228.10 [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:177656_AT
ggagctcgaaggctgttcagatcgtcttcttgtttcaaattgcttaaacgataacgctat
cgacaatcgaaaagcttttttattctctgattgtacattcaacatttcacaagtggctca
attgaatcttgattcttttgacttatcattgcacaaatatgaatcgcttgttttgagaat
aattgccggccatcaagcggaaatcgaaaagttgcaaaaacaattggcggaggctgaagc
caagacgaacggctgctttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCGAAGGCTGTTCAGATCGT 172 521 15 Antisense
TGTTCAGATCGTCTTCTTGTTTCAA 130 563 28 Antisense
AAATTGCTTAAACGATAACGCTATC 125 115 51 Antisense
AAAAGCTTTTTTATTCTCTGATTGT 86 133 84 Antisense
TTATTCTCTGATTGTACATTCAACA 644 677 94 Antisense
GTGGCTCAATTGAATCTTGATTCTT 33 493 127 Antisense
GATTCTTTTGACTTATCATTGCACA 470 431 145 Antisense
GTTTTGAGAATAATTGCCGGCCATC 1 449 184 Antisense
ATTGCCGGCCATCAAGCGGAAATCG 234 7 196 Antisense
GGCGGAGGCTGAAGCCAAGACGAAC 247 541 240 Antisense
AGCCAAGACGAACGGCTGCTTTCCA 436 83 252 Antisense
Sequence Source Affymetrix Proprietary Database