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[177655_at]

Description K02E2.1 /REP_DB=WormBase Gene ID /WP=CE18836 /TR=Q9XUV4 /GB=CAB04545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 04      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 130.4
(0.8)
P 		80.5
(-3)
P 		114.7
(-0.4)
A 		158.7
(3)
P 		78
B 171.7
(3)
P 		120.3
(-0.9)
M 		92.6
(-3)
A 		159.3
(2.1)
P 		79
C 184.8
(3)
P 		106.4
(-1)
P 		66.6
(-3)
A 		148.8
(1.2)
P 		118
avr 162.3
(3) 		102.4
(-2.1) 		91.3
(-3) 		155.6
(2.4) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 201.7
(3)
P 		143.7
(0.4)
P 		106.6
(-1.2)
P 		152
(0.8)
P 		72.2
(-2.7)
P 		65.9
(-3)
A 		136
B 149.9
(3)
P 		96.2
(0.1)
P 		75.9
(-1)
A 		130.5
(2)
A 		112.7
(1)
P 		38.4
(-3)
A 		112
C 153.3
(3)
P 		141.8
(2)
P 		116.3
(-0.1)
A 		117
(-0)
A 		81.6
(-3)
P 		92.8
(-2.1)
P 		72
avr 168.3
(3) 		127.2
(0.6) 		99.6
(-1) 		133.2
(0.9) 		88.8
(-1.6) 		65.7
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 47.5
(3)
P 		17.5
(-3)
P 		30
(-0.5)
A 		23.2
(-1.9)
P 		30
B 54.7
(3)
P 		29.7
(-1.5)
M 		21.5
(-3)
A 		34
(-0.7)
P 		33
C 61.2
(3)
P 		30.6
(-1.8)
P 		23.2
(-3)
A 		25.1
(-2.7)
P 		38
avr 54.5
(3) 		25.9
(-2.8) 		24.9
(-3) 		27.4
(-2.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 37.2
(0.6)
P 		51.1
(3)
P 		23.2
(-1.8)
P 		38.5
(0.8)
P 		21.8
(-2)
P 		16.1
(-3)
A 		35
B 52.2
(3)
P 		32
(-0.2)
P 		18.4
(-2.4)
A 		34.6
(0.2)
A 		45.8
(2)
P 		14.3
(-3)
A 		38
C 56.8
(3)
P 		43.3
(0.6)
P 		29.6
(-1.9)
A 		23.5
(-3)
A 		26.4
(-2.5)
P 		31.1
(-1.6)
P 		33
avr 48.7
(3) 		42.1
(1.6) 		23.7
(-2.3) 		32.2
(-0.5) 		31.3
(-0.7) 		20.5
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13596
Sequence Type Exemplar sequence
Representative Public ID K02E2.1 NCBI
Target Description K02E2.1 /REP_DB=WormBase Gene ID /WP=CE18836 /TR=Q9XUV4 /GB=CAB04545.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075521 NCBI Caenorhabditis elegans K02E2.1 (K02E2.1) mRNA, complete cds. 11/11 None
SNAP00000027371 ENSEMBL cdna:SNAP chromosome:CEL140:V:20349551:20355680:1 11/11 None
GENEFINDER00000027386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20349551:20352956:1 11/11 None
K02E2.1 ENSEMBL cdna:known chromosome:CEL140:V:20349551:20352956:1 gene:K02E2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20349550-20352956(+) 99.65 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E2.1
Entrez Gene 186879 Entrez gene
SwissProt Q9XUV4 EMBL-EBI
WormBase CE18836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04545 Hypothetical protein K02E2.1 [Caenorhabditis elegans] ref|NP_507922.1| K02E2.1 [Caenorhabditis elegans] 0.0
blast CAE61678 Hypothetical protein CBG05621 [Caenorhabditis briggsae] 1.0E-170
blast CAE61678 Hypothetical protein CBG05621 [Caenorhabditis briggsae] 1.0E-166
blast CAB04547 Hypothetical protein K02E2.2 [Caenorhabditis elegans] ref|NP_507923.1| GRounDhog (hedgehog-like family) family member (grd-11) [Caenorhabditis elegans] 2.0E-12
blast CAA99774 Hypothetical protein C15C8.1 [Caenorhabditis elegans] ref|NP_506183.1| C15C8.1 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 9.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507922.1 7 43-65,78-100,115-137,150-172,182-204,239-261,276-298
K02E2.1 7 43-65,78-100,115-137,150-172,182-204,239-261,276-298
SNAP00000027371 7 43-65,78-100,115-137,150-172,182-204,239-261,276-298
GENEFINDER00000027386 7 43-65,78-100,115-137,150-172,182-204,239-261,276-298
Sequence
Target Sequence 
>C. ELEGANS:177655_AT
atttccctcggctttatgtttgcctttatcggaatgggatgtatgacttttgcctgctgt
gccggcaaaaaaatcgccatggatatgctagaccccgtgatttatgatgctcggagtcgg
ttgggatgggctatgctcttttcgattttcgcaccgatcagtgtttatccgtgcttttac
tgcttcgtgtctctggcgtttttcctaaacctctccgattctaatgagcttctgagtaat
gagatggccaccagagtctggagcttcttcttcggacccaccgtactcatattcaccttc
ctgattcttccctcctatcgggacaccatcatgtgcggctgcaaatatcgccgattccaa
caaaaaatccaaatgagccagttggcagcacctgctgcccagggagtcactccgcaaatc
aggatctcggagccagaaaagcttcccgtcgagttcatcaaggagcccgagcagaaagtc
ccactggagccactcttcataccaagtgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCCTCGGCTTTATGTTTGCCT 227 17 592 Antisense
GGGATGTATGACTTTTGCCTGCTGT 691 495 627 Antisense
GCTAGACCCCGTGATTTATGATGCT 442 301 678 Antisense
GATGGGCTATGCTCTTTTCGATTTT 450 407 716 Antisense
TTTATCCGTGCTTTTACTGCTTCGT 210 675 755 Antisense
TCCTAAACCTCTCCGATTCTAATGA 661 589 794 Antisense
TATCGGGACACCATCATGTGCGGCT 325 655 907 Antisense
GAGTCACTCCGCAAATCAGGATCTC 22 401 995 Antisense
CTCGGAGCCAGAAAAGCTTCCCGTC 436 227 1017 Antisense
GCTTCCCGTCGAGTTCATCAAGGAG 71 307 1032 Antisense
GAGCCACTCTTCATACCAAGTGCTG 192 385 1078 Antisense
Sequence Source Affymetrix Proprietary Database