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[177654_at]

Description T06E4.5 /REP_DB=WormBase Gene ID /WP=CE06371 /TR=Q22259 /GB=CAA94791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 41.5
(1.9)
A 		45.3
(3)
A 		24
(-3)
A 		45.4
(3)
A 		21
B 13.8
(-2.3)
A 		62.6
(3)
P 		26.6
(-0.9)
A 		7.4
(-3)
A 		55
C 5.7
(-3)
A 		16.6
(-1)
A 		37.8
(3)
P 		24.8
(0.6)
A 		32
avr 20.3
(-3) 		41.5
(3) 		29.5
(-0.4) 		25.9
(-1.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 24.1
(-2.8)
A 		50.9
(3)
A 		35.5
(-0.4)
A 		43
(1.3)
A 		23.4
(-3)
A 		33.1
(-0.9)
A 		28
B 6
(-3)
A 		16
(-1.3)
A 		23.3
(-0.1)
A 		41.4
(3)
A 		36.9
(2.2)
P 		33.8
(1.7)
A 		35
C 4.5
(-3)
A 		28.9
(1.3)
A 		15.7
(-1)
A 		38.6
(3)
A 		17.2
(-0.8)
A 		16.7
(-0.9)
A 		34
avr 11.5
(-3) 		31.9
(1.1) 		24.8
(-0.3) 		41
(3) 		25.8
(-0.1) 		27.9
(0.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.1
(3)
A 		9.8
(-0.6)
A 		6.3
(-3)
A 		6.6
(-2.8)
A 		9
B 4.4
(-1.8)
A 		15.5
(3)
P 		6.2
(-1)
A 		1.6
(-3)
A 		14
C 1.9
(-3)
A 		4.8
(-1.5)
A 		13.2
(3)
P 		4.2
(-1.8)
A 		11
avr 7.1
(0.1) 		10
(3) 		8.6
(1.6) 		4.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.5
(-3)
A 		18.1
(3)
A 		7.7
(-1.6)
A 		10.9
(-0.2)
A 		7.1
(-1.9)
A 		8.1
(-1.4)
A 		14
B 2.1
(-3)
A 		5.3
(-1.5)
A 		5.7
(-1.3)
A 		11
(1.1)
A 		15
(3)
P 		12.6
(1.9)
A 		13
C 1.7
(-3)
A 		8.8
(3)
A 		4
(-1.1)
A 		7.8
(2.2)
A 		5.6
(0.3)
A 		5.6
(0.3)
A 		7
avr 2.8
(-3) 		10.7
(3) 		5.8
(-0.7) 		9.9
(2.4) 		9.2
(1.9) 		8.8
(1.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11635
Sequence Type Exemplar sequence
Representative Public ID T06E4.5 NCBI
Target Description T06E4.5 /REP_DB=WormBase Gene ID /WP=CE06371 /TR=Q22259 /GB=CAA94791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073084(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073084 NCBI Caenorhabditis elegans T06E4.5 (T06E4.5) mRNA, complete cds. 11/11 None
T06E4.5 ENSEMBL cdna:known chromosome:CEL140:V:9633828:9634840:1 gene:T06E4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007441 7/11 Cross Hyb Matching Probes None
GENEFINDER00000007461 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9633827-9634840(+) 99.67 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E4.5
Entrez Gene 188177 Entrez gene
SwissProt Q22259 EMBL-EBI
WormBase CE34090 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94791 Hypothetical protein T06E4.5 [Caenorhabditis elegans] ref|NP_505485.2| T06E4.5 [Caenorhabditis elegans] 1.0E-139
blast CAB01661 Hypothetical protein T01C3.5 [Caenorhabditis elegans] ref|NP_506689.1| T01C3.5 [Caenorhabditis elegans] 6.0E-20
blast CAE66340 Hypothetical protein CBG11591 [Caenorhabditis briggsae] 2.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505485.2 1 187-209
T06E4.5 1 187-209
Sequence
Target Sequence 
>C. ELEGANS:177654_AT
actggtccggccatattttttaatggaaaccaaaaattgcagcgagttttgctacagaaa
ctggaaagtttgaaagggaaaccgaacgaactgttattttctaaagacaactttattcat
tcggttttcaaagacggaaactcaatgactgacttcatgaaactcagagctgccgcttac
aactccagtcgtcaaaaatgtgacaataacttctttgaggttctagacagtcaagcacca
aacgtcgtggttttggaaagaatggaaatttctatggcaattggagctataactactata
gtgattgcaatatggatttgctattatttctgtgtttccaaagagaaaaagttgaagaag
aaatattgtttaattaagaaaccgaaaacaaaagctacaacaagcagtaacaatgaaatc
aagaaaaacgtattgaagatggatgtgacaaaggataaagatctggaaagttcaaaactt
ccaactgaatctaagcgctcttcattacaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGTCCGGCCATATTTTTTAATG 64 95 352 Antisense
AATTGCAGCGAGTTTTGCTACAGAA 601 177 386 Antisense
GACAACTTTATTCATTCGGTTTTCA 54 365 457 Antisense
GACGGAAACTCAATGACTGACTTCA 92 377 484 Antisense
TGAAACTCAGAGCTGCCGCTTACAA 437 571 509 Antisense
CGCTTACAACTCCAGTCGTCAAAAA 512 255 525 Antisense
GAGGTTCTAGACAGTCAAGCACCAA 7 403 568 Antisense
TCAAGCACCAAACGTCGTGGTTTTG 669 623 582 Antisense
GATTTGCTATTATTTCTGTGTTTCC 478 427 666 Antisense
AACTTCCAACTGAATCTAAGCGCTC 247 139 827 Antisense
ATCTAAGCGCTCTTCATTACAATCT 53 31 840 Antisense
Sequence Source Affymetrix Proprietary Database