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[177652_at]

Description R11A8.2 /REP_DB=WormBase Gene ID /WP=CE06300 /TR=Q21924 /GB=CAA94367.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 76      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 92      6grp_total > 67      4grp_total > 05      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 362
1 2 3 4 range
A 259.7
(-1.7)
P 		215.8
(-2.5)
P 		191.5
(-3)
P 		508.4
(3)
P 		317
B 257.9
(0.2)
P 		146.4
(-3)
P 		150
(-2.9)
P 		357.3
(3)
P 		211
C 299.6
(0.6)
P 		156.2
(-3)
P 		173.5
(-2.6)
P 		392
(3)
P 		236
avr 272.4
(-0.6) 		172.8
(-3) 		171.7
(-3) 		419.2
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 180.5
(-3)
P 		252.2
(-0.8)
P 		284.9
(0.1)
P 		246.1
(-1)
P 		228
(-1.6)
P 		379.6
(3)
P 		199
B 244.5
(-1.9)
P 		191
(-2.9)
P 		223.2
(-2.3)
P 		183.3
(-3)
P 		275
(-1.4)
P 		521.8
(3)
P 		339
C 166.1
(-3)
P 		219.6
(-2.1)
P 		191.3
(-2.6)
P 		240.3
(-1.7)
P 		188.9
(-2.6)
P 		506.1
(3)
P 		340
avr 197
(-3) 		220.9
(-2.5) 		233.1
(-2.2) 		223.2
(-2.4) 		230.6
(-2.3) 		469.2
(3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 94.6
(3)
P 		46.8
(-3)
P 		50.1
(-2.6)
P 		74.4
(0.5)
P 		48
B 82.3
(3)
P 		36.2
(-2.8)
P 		34.8
(-3)
P 		76.1
(2.2)
P 		48
C 99.2
(3)
P 		44.9
(-3)
P 		60.5
(-1.3)
P 		66.1
(-0.7)
P 		54
avr 92
(3) 		42.6
(-3) 		48.5
(-2.3) 		72.2
(0.6) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 33.3
(-3)
P 		89.7
(2.7)
P 		62.1
(-0.1)
P 		62.4
(-0)
P 		68.8
(0.6)
P 		92.4
(3)
P 		59
B 85.1
(-1.5)
P 		63.6
(-2.4)
P 		54.2
(-2.8)
P 		48.6
(-3)
P 		111.7
(-0.4)
P 		194.6
(3)
P 		146
C 61.6
(-2.3)
P 		67
(-2.1)
P 		48.7
(-3)
P 		48.3
(-3)
P 		61.1
(-2.4)
P 		169.4
(3)
P 		121
avr 60
(-2.6) 		73.4
(-1.8) 		55
(-2.9) 		53.1
(-3) 		80.5
(-1.3) 		152.1
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10156
Sequence Type Exemplar sequence
Representative Public ID R11A8.2 NCBI
Target Description R11A8.2 /REP_DB=WormBase Gene ID /WP=CE06300 /TR=Q21924 /GB=CAA94367.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069509 NCBI Caenorhabditis elegans R11A8.2 (R11A8.2) mRNA, complete cds. 11/11 A 
SNAP00000003242 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10358118:10360112:1 11/11 None
GENEFINDER00000003251 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10358118:10360112:1 11/11 None
R11A8.2 ENSEMBL cdna:known chromosome:CEL140:IV:10358118:10360112:1 gene:R11A8.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10358123-10360118(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11A8.2
Entrez Gene 177923 Entrez gene
SwissProt Q21924 EMBL-EBI
WormBase CE06300 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256422_AT KOW domain-containing protein / D111/G-patch domain-containing protein at
CANINE_2:CFAAFFX.24205.1.S1_AT similar to G patch domain and KOW motifs cfa
CANINE_2:CFAAFFX.24206.1.S1_S_AT similar to G patch domain and KOW motifs cfa
HG-U133_PLUS_2:203776_AT G patch domain and KOW motifs hs
HG-U133A:203776_AT G patch domain and KOW motifs hs
HG-U133A_2:203776_AT G patch domain and KOW motifs hs
HU35KSUBD:RC_AA455932_S_AT G patch domain and KOW motifs hs
HUGENEFL:U66359_AT G patch domain and KOW motifs hs
U133_X3P:G7662668_3P_AT G patch domain and KOW motifs hs
HG-U95AV2:41102_AT G patch domain and KOW motifs hs
MG-U74BV2:114030_AT G patch domain and KOW motifs mm
MG-U74BV2:164029_AT G patch domain and KOW motifs mm
MOE430B:1434344_AT G patch domain and KOW motifs mm
MOUSE430_2:1434344_AT G patch domain and KOW motifs mm
MOE430B:1458023_AT G patch domain and KOW motifs, mRNA (cDNA clone IMAGE:30355916) mm
MOUSE430_2:1458023_AT G patch domain and KOW motifs, mRNA (cDNA clone IMAGE:30355916) mm
MU19KSUBA:TC25097_AT G patch domain and KOW motifs, mRNA (cDNA clone IMAGE:30355916) mm
MU19KSUBC:TC38004_AT G patch domain and KOW motifs, mRNA (cDNA clone IMAGE:30355916) mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94367 Hypothetical protein R11A8.2 [Caenorhabditis elegans] ref|NP_501910.1| R11A8.2 [Caenorhabditis elegans] 0.0
blast CAE70865 Hypothetical protein CBG17653 [Caenorhabditis briggsae] 0.0
blast CAA98131 Hypothetical protein F53B2.1 [Caenorhabditis elegans] ref|NP_502395.1| F53B2.1 [Caenorhabditis elegans] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR005824 EMBL-EBI KOW 2.5E-6
Sequence
Target Sequence 
>C. ELEGANS:177652_AT
taagaactgcaatcggaggaaaaacgatgaaagtcagtcaaatagttgctgttgcagtta
gtgcgaaggaatatgaacgagattcgaaatgtttaaataaaagcgaatacgacaaagaaa
aagatcggcttgaaacagaacggaagaagcttgaatctcaaccaccatcaacgtccacgt
ctcaatcttcaaaggactacaaatcgaagtcttcgtcttccaaacatgacaagaattcct
ctgaatacgaaagaaatgataaaatgtgggctcgaacggatcttcttgttagattcattg
atgaagacttcaagcgaggatcattatacgaacaaaaagttcggatagttgatgttgctg
gagataatgacgtaacgattgaagatgatcgagggaacactcattacaatatccgacaat
cctggttggaaactgtaattcctcgagaaatcggtgaaaagctcatgattgtcgctggta
aacgaagcggccaactagctgtgatgcttgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGAACTGCAATCGGAGGAAAAAC 528 635 773 Antisense
GTCAGTCAAATAGTTGCTGTTGCAG 186 465 805 Antisense
GTTGCTGTTGCAGTTAGTGCGAAGG 160 439 817 Antisense
AAGATCGGCTTGAAACAGAACGGAA 499 155 893 Antisense
TCCAAACATGACAAGAATTCCTCTG 63 589 991 Antisense
GATGATCGAGGGAACACTCATTACA 464 411 1156 Antisense
ACTCATTACAATATCCGACAATCCT 622 5 1171 Antisense
CAATATCCGACAATCCTGGTTGGAA 96 179 1179 Antisense
GTCGCTGGTAAACGAAGCGGCCAAC 90 471 1243 Antisense
GAAGCGGCCAACTAGCTGTGATGCT 291 343 1256 Antisense
GGCCAACTAGCTGTGATGCTTGATA 586 543 1261 Antisense
Sequence Source Affymetrix Proprietary Database