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[177650_at]

Description W04G3.8 /REP_DB=WormBase Gene ID /WP=CE19004 /TR=Q93200 /GB=CAA92030.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      6grp_highest_nonorm > 04      6grp_total > 04      4grp_total > 57      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8552
1 2 3 4 range
A 125.5
(-3)
A 		6998.5
(3)
P 		7021.3
(3)
P 		91.9
(-3)
A 		6929
B 134.5
(-3)
A 		8643.8
(3)
P 		8344.1
(2.8)
P 		151.7
(-3)
A 		8509
C 140.6
(-3)
A 		8259.9
(3)
P 		7251.1
(2.3)
P 		190.5
(-3)
A 		8119
avr 133.5
(-3) 		7967.4
(3) 		7538.8
(2.7) 		144.7
(-3) 		7834

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5643
1 2 3 4 5 6 range
A 6580.2
(3)
P 		4437
(0.6)
P 		3304.6
(-0.7)
P 		4636.5
(0.8)
P 		3793
(-0.1)
P 		1263.2
(-3)
P 		5317
B 6057
(3)
P 		4227.5
(0.8)
P 		4547.9
(1.2)
P 		5396.7
(2.2)
P 		2897.4
(-0.8)
P 		1039.1
(-3)
P 		5018
C 6039.9
(3)
P 		4168.3
(0.8)
P 		4444
(1.1)
P 		4447.9
(1.1)
P 		3516.2
(0)
P 		937.5
(-3)
P 		5102
avr 6225.7
(3) 		4277.6
(0.7) 		4098.8
(0.5) 		4827
(1.4) 		3402.2
(-0.3) 		1079.9
(-3) 		5146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2514
1 2 3 4 range
A 45.7
(-2.9)
A 		1519.2
(2)
P 		1835.5
(3)
P 		13.5
(-3)
A 		1822
B 42.9
(-3)
A 		2134.8
(3)
P 		1933.5
(2.4)
P 		32.3
(-3)
A 		2103
C 46.6
(-3)
A 		2374.8
(2.6)
P 		2527.2
(3)
P 		32.1
(-3)
A 		2495
avr 45.1
(-2.9) 		2009.6
(2.7) 		2098.7
(3) 		26
(-3) 		2073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1931
1 2 3 4 5 6 range
A 1213
(1.3)
P 		1578
(3)
P 		719.7
(-1.1)
P 		1175.9
(1.1)
P 		1144.6
(1)
P 		307.5
(-3)
P 		1271
B 2107.5
(3)
P 		1407.2
(0.6)
P 		1104.4
(-0.5)
P 		1429.4
(0.6)
P 		1177.2
(-0.2)
P 		387.5
(-3)
P 		1720
C 2238.7
(3)
P 		1271.9
(-0)
P 		1131.1
(-0.5)
P 		894.5
(-1.2)
P 		1137.8
(-0.4)
P 		313.8
(-3)
P 		1925
avr 1853.1
(3) 		1419
(1.3) 		985.1
(-0.4) 		1166.6
(0.3) 		1153.2
(0.2) 		336.3
(-3) 		1517
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16178
Sequence Type Exemplar sequence
Representative Public ID W04G3.8 NCBI
Target Description W04G3.8 /REP_DB=WormBase Gene ID /WP=CE19004 /TR=Q93200 /GB=CAA92030.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077448 NCBI Caenorhabditis elegans W04G3.8 (W04G3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000042834 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11058576:11059466:1 11/11 None
SNAP00000042819 ENSEMBL cdna:SNAP chromosome:CEL140:X:11058582:11059466:1 10/11 None
W04G3.8.1 ENSEMBL cdna:known chromosome:CEL140:X:11057358:11059720:1 gene:W04G3.8 11/11 A 
W04G3.8.2 ENSEMBL cdna:known chromosome:CEL140:X:11057358:11059824:1 gene:W04G3.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11057429-11059466(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04G3.8
Entrez Gene 181295 Entrez gene
SwissProt Q93200 EMBL-EBI
WormBase CE19004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92030 Hypothetical protein W04G3.8 [Caenorhabditis elegans] emb|CAB01721.1| Hypothetical protein W04G3.8 [Caenorhabditis elegans] ref|NP_509849.1| W04G3.8 [Caenorhabditis elegans] 0.0
blast CAE70760 Hypothetical protein CBG17509 [Caenorhabditis briggsae] 0.0
blast CAA92030 Hypothetical protein W04G3.8 [Caenorhabditis elegans] emb|CAB01721.1| Hypothetical protein W04G3.8 [Caenorhabditis elegans] ref|NP_509849.1| W04G3.8 [Caenorhabditis elegans] 1.0E-118
blast CAA92030 Hypothetical protein W04G3.8 [Caenorhabditis elegans] emb|CAB01721.1| Hypothetical protein W04G3.8 [Caenorhabditis elegans] ref|NP_509849.1| W04G3.8 [Caenorhabditis elegans] 1.0E-116
blast CAE70760 Hypothetical protein CBG17509 [Caenorhabditis briggsae] 1.0E-116
blast CAE70760 Hypothetical protein CBG17509 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:177650_AT
tccaaactctcgctgacaatgtcactgatgctcttctcccagaaacaccaactgtcgatc
tttccaaattcatgggaagatggtttgagggaattaactctccaagagccaccgaacaaa
gatgcgttgttcatcattacggaggacttacccgcaatgacaaaaccgccactttcaccg
ctctcaaggtttacagagaaggatctgagtttggaccagtcaagtattctcttgggtatg
ctttccgtggaggaaacaaagatgccatgctccaacttcactcttctgaaacaagtgacg
ctcaaccattctggatttacaaacttggaccagagggaaagaactcattcggagactccc
aatacgagtacgctatcatctccaattgggtcaaatatccagttactgttttggttcgcg
accctgatactttcaagaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAACTCTCGCTGACAATGTCAC 665 587 1142 Antisense
AAACACCAACTGTCGATCTTTCCAA 385 129 1184 Antisense
TTAACTCTCCAAGAGCCACCGAACA 262 659 1235 Antisense
GCAATGACAAAACCGCCACTTTCAC 362 321 1295 Antisense
ACTTTCACCGCTCTCAAGGTTTACA 103 1 1312 Antisense
TTCTCTTGGGTATGCTTTCCGTGGA 480 683 1368 Antisense
AACAAAGATGCCATGCTCCAACTTC 537 135 1396 Antisense
AAGTGACGCTCAACCATTCTGGATT 651 157 1434 Antisense
AAGAACTCATTCGGAGACTCCCAAT 84 153 1480 Antisense
GTACGCTATCATCTCCAATTGGGTC 405 457 1509 Antisense
GCGACCCTGATACTTTCAAGACCAA 577 289 1559 Antisense
Sequence Source Affymetrix Proprietary Database