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[177649_s_at]

Description F08A8.7 /REP_DB=WormBase Gene ID /WP=CE24884 /TR=Q9N6F2 /GB=CAB76414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 96      4grp_total > 10      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 841
1 2 3 4 range
A 68.5
(-3)
A 		110.5
(-2.7)
A 		107.9
(-2.7)
P 		838.4
(3)
P 		770
B 76.6
(-3)
A 		106.6
(-2.8)
P 		99.8
(-2.8)
P 		909.1
(3)
P 		833
C 95.6
(-3)
A 		178.1
(-2.2)
M 		150.3
(-2.5)
P 		728.6
(3)
P 		633
avr 80.2
(-3) 		131.7
(-2.6) 		119.3
(-2.7) 		825.4
(3) 		745

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 794
1 2 3 4 5 6 range
A 106.8
(-3)
P 		119.3
(-2.9)
P 		201
(-1.9)
P 		326.1
(-0.4)
P 		496.4
(1.6)
P 		619.8
(3)
P 		513
B 59.7
(-3)
P 		85.5
(-2.8)
P 		206.5
(-1.8)
P 		390.4
(-0.2)
P 		566.9
(1.2)
P 		778.6
(3)
P 		719
C 74.9
(-3)
A 		100.1
(-2.8)
P 		147.2
(-2.4)
P 		392.8
(-0.6)
P 		465.4
(0)
P 		853.8
(3)
P 		779
avr 80.5
(-3) 		101.6
(-2.8) 		184.9
(-2.1) 		369.8
(-0.4) 		509.6
(0.8) 		750.7
(3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 24.9
(-2.9)
A 		24
(-3)
A 		28.2
(-2.7)
P 		122.7
(3)
P 		99
B 24.4
(-3)
A 		26.3
(-2.9)
P 		23.1
(-3)
P 		193.7
(3)
P 		171
C 31.7
(-3)
A 		51.2
(-1.7)
M 		52.4
(-1.6)
P 		122.9
(3)
P 		91
avr 27
(-3) 		33.8
(-2.7) 		34.6
(-2.6) 		146.4
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 19.7
(-3)
P 		42.4
(-2)
P 		43.8
(-1.9)
P 		82.7
(-0.1)
P 		149.8
(2.9)
P 		150.9
(3)
P 		131
B 20.8
(-3)
P 		28.5
(-2.8)
P 		50.1
(-2.3)
P 		103.4
(-1.2)
P 		230.3
(1.7)
P 		290.3
(3)
P 		270
C 27.8
(-3)
A 		30.5
(-2.9)
P 		37.5
(-2.8)
P 		79
(-1.8)
P 		150.6
(-0.1)
P 		285.8
(3)
P 		258
avr 22.8
(-3) 		33.8
(-2.7) 		43.8
(-2.4) 		88.4
(-1.2) 		176.9
(1.2) 		242.3
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177649_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1498
Sequence Type Exemplar sequence
Representative Public ID F08A8.7 NCBI
Target Description F08A8.7 /REP_DB=WormBase Gene ID /WP=CE24884 /TR=Q9N6F2 /GB=CAB76414.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060865 NCBI Caenorhabditis elegans F08A8.7 (F08A8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000032489 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12966852:12967784:-1 11/11 None
F08A8.7 ENSEMBL cdna:known chromosome:CEL140:I:12966825:12968052:-1 gene:F08A8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12966782-12967970(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08A8.7
Entrez Gene 173165 Entrez gene
SwissProt Q9N6F2 EMBL-EBI
WormBase CE24884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82211 Hypothetical protein F08A8.7 [Caenorhabditis elegans] emb|CAB76414.1| Hypothetical protein F08A8.7 [Caenorhabditis elegans] ref|NP_493266.1| F08A8.7 [Caenorhabditis elegans] 0.0
blast CAB82211 Hypothetical protein F08A8.7 [Caenorhabditis elegans] emb|CAB76414.1| Hypothetical protein F08A8.7 [Caenorhabditis elegans] ref|NP_493266.1| F08A8.7 [Caenorhabditis elegans] 1.0E-156
blast CAB16858 Hypothetical protein C47B2.1 [Caenorhabditis elegans] ref|NP_493267.1| C47B2.1 [Caenorhabditis elegans] 9.0E-74
blast CAB16858 Hypothetical protein C47B2.1 [Caenorhabditis elegans] ref|NP_493267.1| C47B2.1 [Caenorhabditis elegans] 5.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.4E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.3E-20
Sequence
Target Sequence 
>C. ELEGANS:177649_S_AT
gagatgctcactgtttccgagcgaaatcagtttctctgagtggattcaagaaaccacgag
ctgcgctaattctcagttctttcgatgctggaacacttgtgaaatttgagattatgcgtt
gcatcttcaacgatattcgtccactaacttgcttggaacagtttaaaaatgcaaaacaat
tgcgaactgatcttaacatttgctccgtctttggatttactgtgtcggatcttcttggat
tttcaagtattgaattcaccagtccagaggtatcgccaaatgatctgaaagagttggtaa
attcgtctacaaagctggaaacttgtgtcgtcagcaagcaattagatgatagtgaatcaa
ttgcagaagaaatgctccaagagtttgatcctaccttcgctggcaaaaccggaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGCTCACTGTTTCCGAGCGAA 133 397 545 Antisense
GGATTCAAGAAACCACGAGCTGCGC 559 509 586 Antisense
CGAGCTGCGCTAATTCTCAGTTCTT 345 251 601 Antisense
AATTCTCAGTTCTTTCGATGCTGGA 441 177 612 Antisense
CGATATTCGTCCACTAACTTGCTTG 390 247 675 Antisense
ACTGATCTTAACATTTGCTCCGTCT 565 97 730 Antisense
GCTCCGTCTTTGGATTTACTGTGTC 676 297 746 Antisense
TTTACTGTGTCGGATCTTCTTGGAT 689 673 760 Antisense
TTCACCAGTCCAGAGGTATCGCCAA 97 687 799 Antisense
TCCAAGAGTTTGATCCTACCTTCGC 109 587 920 Antisense
CCTTCGCTGGCAAAACCGGAACCAT 620 263 938 Antisense
Sequence Source Affymetrix Proprietary Database