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[177648_at]

Description K03D3.3 /REP_DB=WormBase Gene ID /WP=CE16209 /TR=O45641 /GB=CAB05240.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 45.4
(-0.7)
A 		28.6
(-3)
A 		40.2
(-1.4)
A 		71.8
(3)
P 		43
B 13.4
(-3)
A 		53.6
(3)
A 		45.5
(1.8)
A 		43.3
(1.5)
A 		40
C 44.8
(2.2)
A 		27.3
(-0.9)
A 		15.2
(-3)
A 		49.1
(3)
A 		34
avr 34.5
(-2.7) 		36.5
(-2.2) 		33.6
(-3) 		54.7
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 52.4
(2.1)
A 		6.2
(-3)
A 		61
(3)
P 		30.7
(-0.3)
A 		37.5
(0.4)
A 		16.5
(-1.9)
A 		55
B 13.7
(-2.1)
A 		32.4
(-0.3)
A 		54.7
(1.9)
A 		65.8
(3)
P 		4.9
(-3)
A 		16.7
(-1.8)
A 		61
C 46.4
(-1.3)
P 		34.6
(-2.1)
P 		20.6
(-3)
A 		61.4
(-0.3)
A 		38.2
(-1.9)
A 		112.5
(3)
A 		92
avr 37.5
(-0.2) 		24.4
(-3) 		45.4
(1.5) 		52.6
(3) 		26.9
(-2.5) 		48.6
(2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.5
(3)
A 		6.2
(-3)
A 		10.5
(-0.5)
A 		10.5
(-0.5)
P 		10
B 4.3
(-3)
A 		13.2
(3)
A 		10.5
(1.2)
A 		9.2
(0.3)
A 		9
C 14.8
(3)
A 		7.9
(-1.4)
A 		5.3
(-3)
A 		8.3
(-1.1)
A 		10
avr 11.9
(3) 		9.1
(-2.4) 		8.8
(-3) 		9.3
(-2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.7
(1.1)
A 		2.2
(-3)
A 		13.3
(3)
P 		7.8
(0)
A 		11.3
(1.9)
A 		4
(-2)
A 		11
B 4.8
(-1.9)
A 		10.8
(0.4)
A 		13.3
(1.4)
A 		17.4
(3)
P 		2
(-3)
A 		6.2
(-1.4)
A 		15
C 17.2
(-0.8)
P 		10.6
(-2)
P 		5.2
(-3)
A 		12.3
(-1.7)
A 		12.4
(-1.7)
A 		37.7
(3)
A 		33
avr 10.6
(-1) 		7.9
(-3) 		10.6
(-1) 		12.5
(0.4) 		8.6
(-2.5) 		16
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8475
Sequence Type Exemplar sequence
Representative Public ID K03D3.3 NCBI
Target Description K03D3.3 /REP_DB=WormBase Gene ID /WP=CE16209 /TR=O45641 /GB=CAB05240.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K03D3.3 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:16326882:16327926:-1 gene:K03D3.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16326684-16327932(-) 95.68 100.0
Public Domain and Genome References
Ensembl K03D3.3
Sequence
Target Sequence 
>C. ELEGANS:177648_AT
attgttttaatttcactatcctcgtcagcttgggtcaaaataaaatttgacagtgaccag
aaacaaagagtgcattgttttaaaaatccggaaaaagaaagtattgttctctctgttctc
atatttgcaagtatagttttcggctttttcctgtcaattattgctcaattatttgctcat
atattaatatttcttctagctattcaaagattcattgtctatttctttccgaaatttaat
caagctctaactttgaactttcaaaaaaattttggcgtggaattcagagttcaatttttg
aaaaactattatataatttgctttatcacttttcttgcaagcacattacatatcactgta
tttattttcacttggaaacgaggaactgctcctcaccaaaataacctacagaaatacata
ctttggcagacaatttgtgtgggtttttgttgtgtgtgtgtaataattttgaaatctgct
gacattttaattttggatgattttttttttaccccttttatgattcaagtttgctgtttg
atgaacaacaggcaacaattggcaggtttgatttcttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTTTAATTTCACTATCCTCGT 202 5 235 Antisense
CTATCCTCGTCAGCTTGGGTCAAAA 559 223 250 Antisense
TGTTCTCTCTGTTCTCATATTTGCA 157 563 339 Antisense
TAGTTTTCGGCTTTTTCCTGTCAAT 183 653 368 Antisense
AGATTCATTGTCTATTTCTTTCCGA 15 67 442 Antisense
TAATTTGCTTTATCACTTTTCTTGC 622 633 548 Antisense
CTTGCAAGCACATTACATATCACTG 231 217 568 Antisense
GGAAACGAGGAACTGCTCCTCACCA 296 527 608 Antisense
GCTCCTCACCAAAATAACCTACAGA 100 297 622 Antisense
TTGTGTGGGTTTTTGTTGTGTGTGT 674 707 669 Antisense
CAATTGGCAGGTTTGATTTCTTCGT 515 179 790 Antisense
Sequence Source Affymetrix Proprietary Database