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[177647_s_at]

Description T06E4.8 /REP_DB=WormBase Gene ID /WP=CE23951 /TR=Q22262 /GB=CAA94794.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 94      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 46.7
(-3)
A 		548.9
(2.1)
P 		632.7
(3)
P 		59.2
(-2.9)
A 		586
B 46.4
(-2.7)
A 		536.4
(3)
P 		384.8
(1.2)
P 		18.9
(-3)
A 		518
C 39.2
(-3)
A 		552
(3)
P 		238.1
(-0.7)
P 		67
(-2.7)
A 		513
avr 44.1
(-3) 		545.8
(3) 		418.5
(1.5) 		48.4
(-2.9) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 183.6
(-3)
A 		268.4
(3)
P 		191
(-2.5)
P 		200.2
(-1.8)
P 		233.3
(0.5)
P 		207.5
(-1.3)
P 		85
B 164.2
(-2.2)
P 		258.2
(0.2)
P 		129.9
(-3)
P 		220.1
(-0.8)
P 		308.2
(1.4)
P 		373.6
(3)
P 		244
C 218.8
(-2.2)
M 		299.7
(-0.7)
P 		176.4
(-3)
P 		235.2
(-1.9)
P 		500.6
(3)
P 		216.5
(-2.3)
P 		324
avr 188.9
(-2.2) 		275.4
(0.6) 		165.8
(-3) 		218.5
(-1.3) 		347.4
(3) 		265.9
(0.3) 		182
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 17
(-2.7)
A 		119.2
(1.2)
P 		165.4
(3)
P 		8.7
(-3)
A 		157
B 14.8
(-2.5)
A 		132.5
(3)
P 		89.2
(1)
P 		4
(-3)
A 		129
C 13
(-2.9)
A 		158.7
(3)
P 		83
(-0.1)
P 		11.3
(-3)
A 		147
avr 14.9
(-2.7) 		136.8
(3) 		112.5
(1.9) 		8
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 33.8
(-3)
A 		95.4
(3)
P 		41.6
(-2.2)
P 		50.8
(-1.3)
P 		70.4
(0.6)
P 		50.5
(-1.4)
P 		62
B 57.1
(-1.6)
P 		85.9
(0)
P 		31.5
(-3)
P 		58.3
(-1.5)
P 		125.2
(2.2)
P 		139.3
(3)
P 		108
C 81.1
(-1.1)
M 		91.4
(-0.6)
P 		44.9
(-3)
P 		47.3
(-2.9)
P 		162
(3)
P 		72.5
(-1.6)
P 		117
avr 57.3
(-1.6) 		90.9
(0.9) 		39.3
(-3) 		52.1
(-2) 		119.2
(3) 		87.4
(0.6) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177647_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11272
Sequence Type Exemplar sequence
Representative Public ID T06E4.8 NCBI
Target Description T06E4.8 /REP_DB=WormBase Gene ID /WP=CE23951 /TR=Q22262 /GB=CAA94794.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073081 NCBI Caenorhabditis elegans T06E4.8 (T06E4.8) mRNA, complete cds. 11/11 None
SNAP00000007437 ENSEMBL cdna:SNAP chromosome:CEL140:V:9624862:9625518:-1 11/11 None
GENEFINDER00000007454 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9624862:9625518:-1 11/11 None
T06E4.8 ENSEMBL cdna:known chromosome:CEL140:V:9624763:9625518:-1 gene:T06E4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9622794-9623476(+) 91.33 91.33
chrV:9624807-9625518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E4.8
Entrez Gene 179349 Entrez gene
SwissProt Q22262 EMBL-EBI
WormBase CE23951 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94794 Hypothetical protein T06E4.8 [Caenorhabditis elegans] ref|NP_505482.1| T06E4.8 [Caenorhabditis elegans] 3.0E-31
blast CAA94794 Hypothetical protein T06E4.8 [Caenorhabditis elegans] ref|NP_505482.1| T06E4.8 [Caenorhabditis elegans] 8.0E-31
blast CAA94795 Hypothetical protein T06E4.9 [Caenorhabditis elegans] ref|NP_505481.1| T06E4.9 [Caenorhabditis elegans] 4.0E-25
blast CAA94795 Hypothetical protein T06E4.9 [Caenorhabditis elegans] ref|NP_505481.1| T06E4.9 [Caenorhabditis elegans] 1.0E-24
blast CAE72211 Hypothetical protein CBG19322 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505482.1 1 9-31
T06E4.8 1 9-31
SNAP00000007437 1 9-31
GENEFINDER00000007454 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:177647_S_AT
ggaacggagaagccatcaaacgatcatcactggtcttctaatcatcatgcaaaccttctc
agctcttcttcttgctttaagtcttttctctggagcctctgctcaattggctgcctggcc
atcgcagagttactctccattctaccaagcattgtttggtggtgctagcaccccagttct
ctctgctccagttgcaaagactgctccatctgcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGGAGAAGCCATCAAACGATC 495 527 15 Antisense
GAGAAGCCATCAAACGATCATCACT 48 393 21 Antisense
CATCAAACGATCATCACTGGTCTTC 483 211 28 Antisense
ATCACTGGTCTTCTAATCATCATGC 18 29 40 Antisense
CTGGTCTTCTAATCATCATGCAAAC 284 241 44 Antisense
GGTCTTCTAATCATCATGCAAACCT 158 503 46 Antisense
TTGCTTTAAGTCTTTTCTCTGGAGC 45 703 86 Antisense
TTAAGTCTTTTCTCTGGAGCCTCTG 306 685 91 Antisense
TGCTCCAGTTGCAAAGACTGCTCCA 394 581 198 Antisense
CAGTTGCAAAGACTGCTCCATCTGC 200 207 203 Antisense
TGCAAAGACTGCTCCATCTGCAATT 638 575 207 Antisense
Sequence Source Affymetrix Proprietary Database