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[177644_s_at]

Description F58E6.5 /REP_DB=WormBase Gene ID /WP=CE06020 /TR=Q20981 /GB=CAA94775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 8.1
(-3)
A 		10.9
(-1.6)
A 		10.2
(-2)
A 		20.5
(3)
A 		12
B 9.5
(-1.9)
A 		6.5
(-2.6)
A 		30.4
(3)
A 		4.7
(-3)
A 		26
C 9.4
(-2.7)
A 		11
(-2.3)
A 		8.4
(-3)
A 		31.2
(3)
A 		23
avr 9
(-3) 		9.5
(-2.7) 		16.3
(1.5) 		18.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 9.5
(-2.9)
A 		8.8
(-2.9)
A 		12.3
(-2.8)
A 		5.4
(-3)
A 		128.7
(0.9)
A 		194.6
(3)
P 		189
B 9.7
(-2.9)
A 		9.8
(-2.9)
A 		7
(-3)
A 		8.8
(-2.9)
A 		110.9
(1.6)
P 		142.9
(3)
P 		136
C 8.9
(-2.8)
A 		9.8
(-2.8)
A 		4.5
(-3)
A 		54.7
(-1.2)
A 		104.5
(0.5)
M 		175.4
(3)
P 		171
avr 9.4
(-2.9) 		9.5
(-2.9) 		7.9
(-3) 		23
(-2.4) 		114.7
(0.9) 		171
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3
(3)
A 		2.4
(-3)
A 		2.7
(0)
A 		3
(3)
A 		1
B 3
(-1)
A 		1.6
(-2.4)
A 		7
(3)
A 		1
(-3)
A 		6
C 3.1
(-2.5)
A 		3.2
(-2.3)
A 		2.9
(-3)
A 		5.3
(3)
A 		2
avr 3
(-1) 		2.4
(-3) 		4.2
(3) 		3.1
(-0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		3.1
(-2.8)
A 		2.7
(-2.8)
A 		1.4
(-3)
A 		38.8
(1.9)
A 		47.4
(3)
P 		46
B 3.4
(-2.8)
A 		3.3
(-2.8)
A 		1.7
(-3)
A 		2.3
(-2.9)
A 		45.1
(2)
P 		53.3
(3)
P 		52
C 3.3
(-2.8)
A 		3
(-2.8)
A 		1.1
(-3)
A 		11
(-2)
A 		33.8
(0.4)
M 		58.7
(3)
P 		58
avr 2.8
(-2.9) 		3.1
(-2.8) 		1.8
(-3) 		4.9
(-2.6) 		39.2
(1.4) 		53.1
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177644_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11672
Sequence Type Exemplar sequence
Representative Public ID F58E6.5 NCBI
Target Description F58E6.5 /REP_DB=WormBase Gene ID /WP=CE06020 /TR=Q20981 /GB=CAA94775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073115 NCBI Caenorhabditis elegans F58E6.5 (F58E6.5) mRNA, complete cds. 11/11 None
SNAP00000040368 ENSEMBL cdna:SNAP chromosome:CEL140:V:9756063:9757091:-1 11/11 None
GENEFINDER00000040377 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9754659:9757091:-1 11/11 None
F58E6.5 ENSEMBL cdna:known chromosome:CEL140:V:9756032:9757142:-1 gene:F58E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9756062-9757091(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58E6.5
Entrez Gene 179368 Entrez gene
SwissProt Q20981 EMBL-EBI
WormBase CE06020 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94775 Hypothetical protein F58E6.5 [Caenorhabditis elegans] ref|NP_505516.1| F58E6.5 [Caenorhabditis elegans] 1.0E-160
blast CAA94775 Hypothetical protein F58E6.5 [Caenorhabditis elegans] ref|NP_505516.1| F58E6.5 [Caenorhabditis elegans] 1.0E-159
blast CAA94776 Hypothetical protein F58E6.6 [Caenorhabditis elegans] ref|NP_505515.1| F58E6.6 [Caenorhabditis elegans] 1.0E-84
blast CAE64695 Hypothetical protein CBG09477 [Caenorhabditis briggsae] 5.0E-84
blast CAE64695 Hypothetical protein CBG09477 [Caenorhabditis briggsae] 1.0E-83
blast CAE63544 Hypothetical protein CBG08027 [Caenorhabditis briggsae] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040377 1 473-495
Sequence
Target Sequence 
>C. ELEGANS:177644_S_AT
gattgccattcttttccaaggagtcaatgatcagaaagagaacgaaacacagcaaccaac
gaataacgacgacgatgaggacaaggatcgtcaaggacagttgcgttcgaagagtaaggt
cgagactgcaaagggcaagaaggcgactgtggtgatgttcgtgagaaaggagggtgattc
tgtatcggatgaggaagatgacgaaggagctgtcgaaggagctgagcatacaaatcctgc
tggagttgctacttctaacgaagctggaaacatgagcgagctccgtacaactcgtcctgc
tggagcatttactggagttgttgcctcaaacgacaatcctatgagcgaactccgcactac
tcgtccagctggtaatttctctggtcaaacagcttcaactccaggaggagctgtggatcc
gaaaagcatggggctcaaaaccactcgtccggccggagcattcactggtcaggtggcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCCATTCTTTTCCAAGGAGTC 446 431 363 Antisense
GGATCGTCAAGGACAGTTGCGTTCG 659 511 447 Antisense
AAATCCTGCTGGAGTTGCTACTTCT 265 117 594 Antisense
ATGAGCGAGCTCCGTACAACTCGTC 175 45 634 Antisense
ACAACTCGTCCTGCTGGAGCATTTA 449 113 649 Antisense
GTTGCCTCAAACGACAATCCTATGA 692 439 682 Antisense
TCCTATGAGCGAACTCCGCACTACT 167 591 699 Antisense
GCACTACTCGTCCAGCTGGTAATTT 18 317 716 Antisense
GTCAAACAGCTTCAACTCCAGGAGG 697 463 746 Antisense
AAGCATGGGGCTCAAAACCACTCGT 595 69 786 Antisense
GAGCATTCACTGGTCAGGTGGCTTC 429 389 818 Antisense
Sequence Source Affymetrix Proprietary Database