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[177643_at]

Description T26C5.2 /REP_DB=WormBase Gene ID /WP=CE06513 /TR=Q22815 /GB=CAA90727.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 46      6grp_highest_nonorm > 52      6grp_total > 20      4grp_total > 49      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1596
1 2 3 4 range
A 42.3
(-3)
M 		1198.2
(1.9)
P 		1470.7
(3)
P 		111.8
(-2.7)
P 		1428
B 49.1
(-3)
P 		1493.2
(3)
P 		1315.4
(2.3)
P 		83.9
(-2.9)
P 		1444
C 70.4
(-3)
A 		1375.7
(2)
P 		1638.6
(3)
P 		97.6
(-2.9)
P 		1568
avr 53.9
(-3) 		1355.7
(2.5) 		1474.9
(3) 		97.8
(-2.8) 		1421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 800
1 2 3 4 5 6 range
A 310.6
(-2.2)
P 		979.4
(3)
P 		760.6
(1.3)
P 		702.1
(0.8)
P 		458
(-1.1)
P 		210.1
(-3)
P 		769
B 360.6
(-1.4)
P 		877.3
(3)
P 		799
(2.3)
P 		582.4
(0.5)
P 		361.2
(-1.4)
P 		179.8
(-3)
P 		698
C 315
(-2)
P 		912.9
(3)
P 		686
(1.1)
P 		763
(1.7)
P 		407.7
(-1.2)
P 		196.4
(-3)
P 		717
avr 328.7
(-1.9) 		923.2
(3) 		748.5
(1.6) 		682.5
(1) 		409
(-1.2) 		195.4
(-3) 		728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 556
1 2 3 4 range
A 15.4
(-3)
M 		260.1
(1)
P 		384.5
(3)
P 		16.4
(-3)
P 		369
B 15.7
(-3)
P 		368.8
(3)
P 		304.8
(1.9)
P 		17.9
(-3)
P 		353
C 23.3
(-2.9)
A 		395.5
(1.1)
P 		571.1
(3)
P 		16.5
(-3)
P 		555
avr 18.1
(-3) 		341.5
(1.8) 		420.1
(3) 		16.9
(-3) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 57.3
(-2.9)
P 		348.3
(3)
P 		165.6
(-0.7)
P 		178.1
(-0.4)
P 		138.2
(-1.2)
P 		51.2
(-3)
P 		297
B 125.5
(-1.4)
P 		292
(3)
P 		194
(0.4)
P 		154.3
(-0.7)
P 		146.7
(-0.9)
P 		67.1
(-3)
P 		225
C 116.7
(-1.6)
P 		278.6
(3)
P 		174.6
(0.1)
P 		153.4
(-0.5)
P 		131.9
(-1.1)
P 		65.7
(-3)
P 		213
avr 99.8
(-2.1) 		306.3
(3) 		178.1
(-0.1) 		161.9
(-0.5) 		138.9
(-1.1) 		61.3
(-3) 		245
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2867
Sequence Type Exemplar sequence
Representative Public ID T26C5.2 NCBI
Target Description T26C5.2 /REP_DB=WormBase Gene ID /WP=CE06513 /TR=Q22815 /GB=CAA90727.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063567 NCBI Caenorhabditis elegans T26C5.2 (T26C5.2) mRNA, complete cds. 11/11 None
SNAP00000039779 ENSEMBL cdna:SNAP chromosome:CEL140:II:9233149:9235917:1 11/11 None
GENEFINDER00000039786 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9231451:9235917:1 11/11 None
T26C5.2 ENSEMBL cdna:known chromosome:CEL140:II:9233133:9236113:1 gene:T26C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9233145-9235914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C5.2
Entrez Gene 174465 Entrez gene
SwissProt Q22815 EMBL-EBI
WormBase CE35032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90727 Hypothetical protein T26C5.2 [Caenorhabditis elegans] ref|NP_495968.2| T26C5.2 [Caenorhabditis elegans] 0.0
blast CAE57893 Hypothetical protein CBG00939 [Caenorhabditis briggsae] 0.0
blast CAE57893 Hypothetical protein CBG00939 [Caenorhabditis briggsae] 1.0E-171
blast CAA90726 Hypothetical protein T26C5.1 [Caenorhabditis elegans] ref|NP_495967.1| Glutathione S-Transferase family member (gst-13) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 6.6E-14
Pfam IPR003014 EMBL-EBI N/apple PAN 2.9E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 2.9E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-18
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.6E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.6E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-7
Pfam IPR003014 EMBL-EBI N/apple PAN 2.9E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:177643_AT
gaattgccgatcttacacttacttcgaaaagactcacacatgtcacttgagcaccaaatc
cgacggagtaacaatcaaagctccaccttctggagatttcacagctactacatccacaaa
gttctgctatccaagaacattctcagttttcgacggatgttccaactttgttgcattccg
tgattattcagtgagaattgaagcagtcgaagaattcaatgatttaccaaaaggatacga
tggaatgcaattatgtattgagttgtgtgttttgtccaccaaattcacatgcagatcatc
aacattcaatccaataactggacaatgtagactgatgactgaagattccatgacaagccc
agattcttttgaatatgatgagttccagaaggcattgtactttgaaaatggatgtacaaa
tgctgagaatgagactccaggctcttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGCCGATCTTACACTTACTTC 624 323 1140 Antisense
GTCACTTGAGCACCAAATCCGACGG 460 463 1181 Antisense
AGTAACAATCAAAGCTCCACCTTCT 164 63 1206 Antisense
GAGATTTCACAGCTACTACATCCAC 517 397 1232 Antisense
ACATCCACAAAGTTCTGCTATCCAA 310 107 1249 Antisense
GAACATTCTCAGTTTTCGACGGATG 450 351 1274 Antisense
CCAACTTTGTTGCATTCCGTGATTA 170 275 1301 Antisense
TGAGTTGTGTGTTTTGTCCACCAAA 42 569 1398 Antisense
GTCCACCAAATTCACATGCAGATCA 644 477 1413 Antisense
GAAGATTCCATGACAAGCCCAGATT 422 337 1480 Antisense
GAGAATGAGACTCCAGGCTCTTCTG 284 391 1564 Antisense
Sequence Source Affymetrix Proprietary Database