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[177641_at]

Description F36G9.7 /REP_DB=WormBase Gene ID /WP=CE15984 /TR=O45477 /GB=CAB04338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 2.5
(-3)
A 		1.7
(-3)
A 		6.1
(-2.9)
A 		229.3
(3)
P 		228
B 6.1
(-2.9)
A 		2.2
(-3)
A 		2.5
(-3)
A 		211.2
(3)
P 		209
C 5.6
(-3)
A 		13.6
(-2.8)
A 		9.7
(-2.9)
A 		243.7
(3)
P 		238
avr 4.7
(-3) 		5.8
(-3) 		6.1
(-3) 		228.1
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 9
(-2.9)
A 		7.2
(-2.9)
A 		5.7
(-3)
A 		70.4
(-0.8)
A 		183.7
(3)
M 		135.8
(1.4)
P 		178
B 1.4
(-3)
A 		2.2
(-3)
A 		2.2
(-3)
A 		56.5
(-1.9)
A 		222.5
(1.4)
P 		304.9
(3)
P 		304
C 4.8
(-3)
A 		5.2
(-3)
A 		9.6
(-2.9)
A 		36.2
(-2.2)
A 		199.3
(2.1)
P 		235.6
(3)
P 		231
avr 5.1
(-3) 		4.9
(-3) 		5.8
(-3) 		54.4
(-1.7) 		201.8
(2.4) 		225.4
(3) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 0.9
(-2.9)
A 		0.4
(-3)
A 		1.6
(-2.8)
A 		33.6
(3)
P 		33
B 2
(-2.8)
A 		0.6
(-3)
A 		0.6
(-3)
A 		45
(3)
P 		44
C 1.9
(-3)
A 		3.9
(-2.7)
A 		3.4
(-2.8)
A 		41.1
(3)
P 		39
avr 1.6
(-3) 		1.6
(-3) 		1.9
(-3) 		39.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		2.5
(-2.9)
A 		1.2
(-3)
A 		17.9
(-1.2)
A 		55.4
(3)
M 		33.1
(0.5)
P 		54
B 0.5
(-3)
A 		0.7
(-3)
A 		0.5
(-3)
A 		15
(-2.2)
A 		90.4
(1.8)
P 		113.7
(3)
P 		113
C 1.8
(-3)
A 		1.6
(-3)
A 		2.4
(-2.9)
A 		7.3
(-2.6)
A 		64.5
(1.9)
P 		78.9
(3)
P 		77
avr 1.3
(-3) 		1.6
(-3) 		1.4
(-3) 		13.4
(-2) 		70.1
(2.6) 		75.2
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14123
Sequence Type Exemplar sequence
Representative Public ID F36G9.7 NCBI
Target Description F36G9.7 /REP_DB=WormBase Gene ID /WP=CE15984 /TR=O45477 /GB=CAB04338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074602 NCBI Caenorhabditis elegans F36G9.7 (F36G9.7) mRNA, complete cds. 11/11 None
GENEFINDER00000043441 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15967950:15972336:-1 10/11 None
F36G9.7 ENSEMBL cdna:known chromosome:CEL140:V:15970405:15972336:-1 gene:F36G9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15970404-15972336(-) 94.31 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G9.7
Entrez Gene 185370 Entrez gene
SwissProt O45477 EMBL-EBI
WormBase CE15984 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04338 Hypothetical protein F36G9.7 [Caenorhabditis elegans] ref|NP_507003.1| F36G9.7 [Caenorhabditis elegans] 1.0E-156
blast CAB04338 Hypothetical protein F36G9.7 [Caenorhabditis elegans] ref|NP_507003.1| F36G9.7 [Caenorhabditis elegans] 1.0E-149
blast CAB04337 Hypothetical protein F36G9.8 [Caenorhabditis elegans] ref|NP_507002.1| Serpentine Receptor, class I family member (sri-1) [Caenorhabditis elegans] 1.0E-141
blast CAB04339 Hypothetical protein F36G9.9 [Caenorhabditis elegans] ref|NP_507001.1| Serpentine Receptor, class I family member (sri-2) [Caenorhabditis elegans] 9.0E-94
blast CAE61127 Hypothetical protein CBG04886 [Caenorhabditis briggsae] 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507003.1 6 40-62,74-96,146-168,178-197,209-231,251-270
F36G9.7 6 40-62,74-96,146-168,178-197,209-231,251-270
GENEFINDER00000043441 11 40-62,74-96,146-168,178-197,209-231,251-273,301-323,338-360,398-420,450-472,479-501
Sequence
Target Sequence 
>C. ELEGANS:177641_AT
ttgtatgatcgtggtcgctgtgctcatttttattgatcgattgatttattggaaacacaa
atttgatgctctaaattttgaagtcaagtttccgagacctagaagctcgattcgaaaatc
gaataaagagcaagtaaagcaatgggaaacggataaatcaaatagaagtagttcaaaaaa
actgatgaatttcaaggttttctggagaataattgtttatctcgtaattcttatcggaac
attctctgctctatatgtcctacacattagtattcacacatctggattcgaaaatcctta
cccaatattgtatagtatttatttcggatttttggcattatttgtatatttttgcaaaat
tcatcacttattttcttccatatttaatttgattgtcaatttttgtcagcttttttctcc
tatccccttcagtaatgaagctatttattatgttctaaataaaccttttcagcatttttc
ttcatttccttattatgaatatctttgcacacactattggacaaatttaacatgctatac
ttcaatctttgtttttgtcaatgtatccttttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTATGATCGTGGTCGCTGTGCTC 522 707 249 Antisense
GTCAAGTTTCCGAGACCTAGAAGCT 623 265 331 Antisense
GTTTATCTCGTAATTCTTATCGGAA 222 449 463 Antisense
CTTATCGGAACATTCTCTGCTCTAT 463 221 478 Antisense
CTCTGCTCTATATGTCCTACACATT 575 231 492 Antisense
TTAGTATTCACACATCTGGATTCGA 207 679 515 Antisense
GATTCGAAAATCCTTACCCAATATT 32 429 533 Antisense
AATTCATCACTTATTTTCTTCCATA 167 177 606 Antisense
TCTCCTATCCCCTTCAGTAATGAAG 35 611 664 Antisense
AACCTTTTCAGCATTTTTCTTCATT 6 147 710 Antisense
GTTTTTGTCAATGTATCCTTTTCTG 495 449 799 Antisense
Sequence Source Affymetrix Proprietary Database