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[177640_at]

Description F58D5.3 /REP_DB=WormBase Gene ID /WP=CE25019 /TR=Q9N6C3 /GB=CAB76717.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 05      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 91.6
(-3)
A 		123.1
(-0.2)
P 		159.3
(3)
P 		119.3
(-0.5)
P 		68
B 138.7
(0.2)
P 		188.5
(3)
P 		138.3
(0.2)
P 		82.6
(-3)
P 		106
C 130.9
(-1.1)
P 		197.8
(3)
P 		100.7
(-3)
P 		160.2
(0.7)
P 		97
avr 120.4
(-3) 		169.8
(3) 		132.8
(-1.5) 		120.7
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 207
(3)
P 		106.7
(-1.7)
A 		95.4
(-2.2)
A 		101.9
(-1.9)
P 		97.9
(-2.1)
P 		78.5
(-3)
A 		129
B 82.9
(-0.7)
M 		100.1
(1.9)
P 		106.9
(3)
P 		68.2
(-3)
A 		82.9
(-0.7)
M 		83.1
(-0.7)
A 		39
C 93.2
(0.6)
P 		118.5
(3)
P 		73.5
(-1.3)
A 		85
(-0.2)
P 		118.9
(3)
P 		55.6
(-3)
M 		63
avr 127.7
(3) 		108.4
(0.9) 		91.9
(-0.9) 		85
(-1.6) 		99.9
(-0) 		72.4
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 33.3
(0.9)
A 		26.7
(-0.7)
P 		41.6
(3)
P 		17.5
(-3)
P 		24
B 44.2
(2.5)
P 		46.6
(3)
P 		32
(-0)
P 		17.6
(-3)
P 		29
C 43.3
(0.3)
P 		56.9
(3)
P 		35.1
(-1.4)
P 		27
(-3)
P 		30
avr 40.3
(2.2) 		43.4
(3) 		36.2
(1.1) 		20.7
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 38.2
(3)
P 		38
(2.9)
A 		20.8
(-2.5)
A 		25.9
(-0.9)
P 		29.5
(0.3)
P 		19.1
(-3)
A 		19
B 28.8
(1.1)
M 		33.3
(2.8)
P 		26
(0)
P 		18.1
(-3)
A 		33.7
(3)
M 		31
(2)
A 		16
C 34.6
(1.9)
P 		36.2
(2.4)
P 		18.7
(-2.6)
A 		17.1
(-3)
P 		38.5
(3)
P 		18.6
(-2.6)
M 		21
avr 33.9
(2.3) 		35.8
(3) 		21.8
(-2.5) 		20.4
(-3) 		33.9
(2.3) 		22.9
(-2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1480
Sequence Type Exemplar sequence
Representative Public ID F58D5.3 NCBI
Target Description F58D5.3 /REP_DB=WormBase Gene ID /WP=CE25019 /TR=Q9N6C3 /GB=CAB76717.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060650 NCBI Caenorhabditis elegans F58D5.3 (F58D5.3) mRNA, complete cds. 11/11 None
F58D5.3 ENSEMBL cdna:known chromosome:CEL140:I:12077928:12081000:1 gene:F58D5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12077976-12080901(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58D5.3
Entrez Gene 173088 Entrez gene
SwissProt Q9N6C3 EMBL-EBI
WormBase CE25019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76717 Hypothetical protein F58D5.3 [Caenorhabditis elegans] emb|CAB76731.1| Hypothetical protein F58D5.3 [Caenorhabditis elegans] ref|NP_493051.1| F58D5.3 [Caenorhabditis elegans] 0.0
blast CAE69603 Hypothetical protein CBG15832 [Caenorhabditis briggsae] 1.0E-107
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 8.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 3.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493051.1 1 5-27
F58D5.3 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:177640_AT
gactccacatccatcaagtgcgattagagcggaactactgatcccagaagagttccggaa
ggactttttaatatgtgttcataccaagcaaacccagttaggggatccgaaactttcgag
cccgtcggatccattttttacacggagcgccacagattatttggtgcaaaaatacaaatc
cagcggcaaacaggttactgtagcaattcttgggaacgatccaatttgggcgcaaaattt
gtttcacgataaaattggaaaatccaactatttttccaagttcaacaactcttccgatgc
gatattttcgaaaaattcaccagaatatacggctcttctgacacttggcatgtcgccaac
cgatgacgtggcattttcccgcaacttctgtgacgtcatcatgttgtcggctccgacgag
ctcgttcggttggtggctggcgtatctagcgaaagagtcggctgaaatttattataggga
tcccaaagaagttagcgaccaaatcttcgccgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCACATCCATCAAGTGCGATT 342 373 588 Antisense
TCCGAAACTTTCGAGCCCGTCGGAT 46 587 693 Antisense
GGATCCATTTTTTACACGGAGCGCC 482 513 714 Antisense
GGAGCGCCACAGATTATTTGGTGCA 670 521 731 Antisense
TTCAACAACTCTTCCGATGCGATAT 603 685 868 Antisense
AGAATATACGGCTCTTCTGACACTT 522 75 909 Antisense
GCATGTCGCCAACCGATGACGTGGC 365 309 935 Antisense
TCATGTTGTCGGCTCCGACGAGCTC 175 623 986 Antisense
CCGACGAGCTCGTTCGGTTGGTGGC 537 261 1000 Antisense
GTTGGTGGCTGGCGTATCTAGCGAA 259 435 1016 Antisense
GTTAGCGACCAAATCTTCGCCGAAA 113 447 1078 Antisense
Sequence Source Affymetrix Proprietary Database