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[177639_at]

Description F47H4.6 /REP_DB=WormBase Gene ID /WP=CE19877 /TR=Q9U3E8 /GB=CAB63202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 30      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 90.3
(3)
P 		55.8
(0.6)
A 		5.4
(-3)
A 		54.9
(0.5)
A 		85
B 62.1
(3)
P 		27.1
(-0.8)
A 		6.4
(-3)
A 		21.3
(-1.4)
A 		56
C 93.3
(3)
P 		26.3
(-2.5)
A 		20.1
(-3)
A 		74.3
(1.4)
P 		73
avr 81.9
(3) 		36.4
(-0.8) 		10.6
(-3) 		50.2
(0.3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 18.7
(-1.2)
A 		53.9
(3)
P 		26.5
(-0.2)
A 		39.6
(1.3)
A 		23.6
(-0.6)
A 		3.3
(-3)
A 		51
B 44.8
(-0)
A 		88.1
(3)
P 		55.7
(0.7)
A 		48.9
(0.2)
A 		2.7
(-3)
A 		13.2
(-2.3)
A 		85
C 17.5
(-2.3)
A 		87.3
(3)
P 		49.9
(0.2)
A 		40.9
(-0.5)
A 		13.2
(-2.6)
A 		8.1
(-3)
A 		79
avr 27
(-1.3) 		76.4
(3) 		44
(0.1) 		43.1
(0.1) 		13.2
(-2.6) 		8.2
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.9
(3)
P 		12.1
(-1)
A 		1.4
(-3)
A 		8
(-1.7)
A 		32
B 19.8
(3)
P 		6.7
(-1.3)
A 		1.5
(-3)
A 		4.5
(-2)
A 		18
C 30.9
(3)
P 		7.6
(-2.8)
A 		7
(-3)
A 		12.5
(-1.6)
P 		24
avr 27.9
(3) 		8.8
(-1.7) 		3.3
(-3) 		8.3
(-1.8) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.4
(-2.2)
A 		19.2
(3)
P 		5.8
(-1.4)
A 		10
(0)
A 		7.1
(-0.9)
A 		0.8
(-3)
A 		18
B 15.6
(0.1)
A 		29.3
(3)
P 		13.5
(-0.4)
A 		13
(-0.5)
A 		1.1
(-3)
A 		4.9
(-2.2)
A 		28
C 6.5
(-2)
A 		26.6
(3)
P 		12.7
(-0.5)
A 		8.2
(-1.6)
A 		4.3
(-2.6)
A 		2.7
(-3)
A 		24
avr 8.5
(-1.5) 		25
(3) 		10.7
(-0.9) 		10.4
(-0.9) 		4.2
(-2.6) 		2.8
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177639_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14445
Sequence Type Exemplar sequence
Representative Public ID F47H4.6 NCBI
Target Description F47H4.6 /REP_DB=WormBase Gene ID /WP=CE19877 /TR=Q9U3E8 /GB=CAB63202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074988 NCBI Caenorhabditis elegans F47H4.6 (F47H4.6) mRNA, complete cds. 11/11 None
SNAP00000022025 ENSEMBL cdna:SNAP chromosome:CEL140:V:17338715:17340953:1 9/11 None
GENEFINDER00000022046 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17338715:17340953:1 11/11 None
F47H4.6 ENSEMBL cdna:known chromosome:CEL140:V:17338959:17340953:1 gene:F47H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17338958-17340953(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47H4.6
Entrez Gene 185952 Entrez gene
SwissProt Q9U3E8 EMBL-EBI
WormBase CE19877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63202 Hypothetical protein F47H4.6 [Caenorhabditis elegans] ref|NP_507389.1| F47H4.6 [Caenorhabditis elegans] 0.0
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 0.0
blast CAB07206 Hypothetical protein F47H4.7 [Caenorhabditis elegans] ref|NP_507390.1| F47H4.7 [Caenorhabditis elegans] 0.0
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.2E-22
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.1E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.8E-51
Sequence
Target Sequence 
>C. ELEGANS:177639_AT
atggcgttgcatgattggtcggtggtcatgcagaatcagaaactcaagctcagggaactc
actttgactttggccatggaaagttataagcatcaggattgctatgaaactatcaagact
gttttgagaaaatcgaactgtctatttgtagagaagatcacacttgaaggcttcactttc
cgtgaagtttccgaagtcctacggaactgtaaaccaagagtacttaacatgatagtgctt
aattcgtcgacagagagcaatggaattgaacatttggttcatttggaccaatggagagag
gcaagggtttttgaaagcagccgaaacagcattttacaaatatatgtcgggattttgttt
catttttcaaagatcgatgtttccctgaaaactctatcaaactcaaatgcgattcaaatg
cgagataaactcctgaggtcccctagttttgaacatggatgcttcagaatgttgaactac
aaccctattgagattgtgattgtgtttgaaacgaattactcaggaggatcatatggcgct
attacctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCGTTGCATGATTGGTCGGTGG 580 53 862 Antisense
TGGTCGGTGGTCATGCAGAATCAGA 189 553 877 Antisense
GAAACTCAAGCTCAGGGAACTCACT 513 355 900 Antisense
ACTCACTTTGACTTTGGCCATGGAA 204 101 918 Antisense
ACACTTGAAGGCTTCACTTTCCGTG 197 107 1021 Antisense
TCCGTGAAGTTTCCGAAGTCCTACG 544 589 1040 Antisense
GATAGTGCTTAATTCGTCGACAGAG 510 423 1092 Antisense
GATCGATGTTTCCCTGAAAACTCTA 449 417 1233 Antisense
TGCGAGATAAACTCCTGAGGTCCCC 495 573 1280 Antisense
TGAGGTCCCCTAGTTTTGAACATGG 160 555 1295 Antisense
GGATCATATGGCGCTATTACCTACA 250 511 1387 Antisense
Sequence Source Affymetrix Proprietary Database