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[177638_at]

Description C43D7.4 /REP_DB=WormBase Gene ID /WP=CE18548 /TR=Q9XVC1 /GB=CAB03959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 4
(-3)
A 		37.3
(-0.8)
A 		26.1
(-1.6)
A 		96.5
(3)
A 		93
B 21.3
(1.9)
A 		4.9
(-2.7)
A 		25.4
(3)
A 		3.9
(-3)
A 		22
C 4.4
(-3)
A 		33.7
(3)
A 		4.7
(-2.9)
A 		10.5
(-1.8)
A 		29
avr 9.9
(-3) 		25.3
(0.4) 		18.7
(-1.1) 		37
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 3.6
(-3)
A 		4.2
(-2.9)
A 		11
(-1.9)
A 		44.6
(3)
A 		3.9
(-3)
A 		8.8
(-2.2)
A 		41
B 30.3
(0.9)
A 		17
(-0.8)
A 		4.2
(-2.5)
A 		46
(3)
A 		10.5
(-1.7)
A 		0.8
(-3)
A 		45
C 43.9
(3)
A 		5.2
(-2.4)
A 		1.2
(-2.9)
A 		4.3
(-2.5)
A 		0.7
(-3)
A 		0.9
(-3)
A 		43
avr 25.9
(1.8) 		8.8
(-1.9) 		5.5
(-2.6) 		31.6
(3) 		5
(-2.7) 		3.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.5
(-3)
A 		8.1
(0.1)
A 		6.8
(-0.5)
A 		14.1
(3)
A 		13
B 6.8
(3)
A 		1.2
(-2.6)
A 		5.9
(2.1)
A 		0.8
(-3)
A 		6
C 1.5
(-3)
A 		9.7
(3)
A 		1.6
(-2.9)
A 		1.8
(-2.8)
A 		8
avr 3.3
(-3) 		6.3
(3) 		4.8
(0) 		5.6
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.5
(-2.5)
A 		2.4
(-2)
A 		11.3
(3)
A 		1.2
(-2.7)
A 		2.1
(-2.2)
A 		11
B 10.5
(2.1)
A 		5.7
(-0.3)
A 		1
(-2.6)
A 		12.2
(3)
A 		4.3
(-1)
A 		0.3
(-3)
A 		12
C 16.3
(3)
A 		1.6
(-2.5)
A 		0.3
(-3)
A 		0.9
(-2.7)
A 		0.2
(-3)
A 		0.3
(-3)
A 		16
avr 9.2
(3) 		2.9
(-1.6) 		1.2
(-2.8) 		8.1
(2.2) 		1.9
(-2.3) 		0.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177638_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14440
Sequence Type Exemplar sequence
Representative Public ID C43D7.4 NCBI
Target Description C43D7.4 /REP_DB=WormBase Gene ID /WP=CE18548 /TR=Q9XVC1 /GB=CAB03959.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075364 NCBI Caenorhabditis elegans C43D7.4 (C43D7.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010489 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19324474:19325060:-1 11/11 None
C43D7.4 ENSEMBL cdna:known chromosome:CEL140:V:19324474:19325060:-1 gene:C43D7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19324473-19325060(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43D7.4
Entrez Gene 183409 Entrez gene
SwissProt Q9XVC1 EMBL-EBI
WormBase CE18548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03959 Hypothetical protein C43D7.4 [Caenorhabditis elegans] ref|NP_507765.1| C43D7.4 [Caenorhabditis elegans] 3.0E-89
blast CAB03961 Hypothetical protein C43D7.5 [Caenorhabditis elegans] ref|NP_507764.1| C43D7.5 [Caenorhabditis elegans] 4.0E-55
Sequence
Target Sequence 
>C. ELEGANS:177638_AT
gtgcacgcgaatgtcgacacaaacattgataaccgcaaagataattgcgacaataggaat
accaattcacacagcgttgaccgaaaagataattttggcaatacaaataccaatttacac
tccgtgaaccgaaaagataattgcgacaaccgtgaggatggcgatatgaatttatattac
agagaagataattgtaacaatcgagaggaaacacaattcagaactttgcattattcttgt
cataatcaacaaattataaactcctttacgggaaacaacattgacaatcgggtgatcaat
ttgtccggcgcgaattttcccaagaaaatggacggagcggagttaatgagggtctttttc
aacgcaccaatgtcaatgccgaccagttcgaagaacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCACGCGAATGTCGACACAAACA 177 481 22 Antisense
TACCAATTCACACAGCGTTGACCGA 34 651 81 Antisense
TACCAATTTACACTCCGTGAACCGA 42 651 129 Antisense
ATTGCGACAACCGTGAGGATGGCGA 450 5 161 Antisense
GAACTTTGCATTATTCTTGTCATAA 694 349 242 Antisense
TCGGGTGATCAATTTGTCCGGCGCG 667 605 309 Antisense
TCAATTTGTCCGGCGCGAATTTTCC 684 633 317 Antisense
ACGGAGCGGAGTTAATGAGGGTCTT 600 91 353 Antisense
TGAGGGTCTTTTTCAACGCACCAAT 648 567 368 Antisense
CAACGCACCAATGTCAATGCCGACC 229 187 381 Antisense
CAATGCCGACCAGTTCGAAGAACGC 187 183 395 Antisense
Sequence Source Affymetrix Proprietary Database