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[177637_at]

Description F21D9.5 /REP_DB=WormBase Gene ID /WP=CE18631 /TR=Q9XV70 /GB=CAB04164.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(-3)
A 		5.2
(-0.2)
A 		3.1
(-2.4)
A 		8.2
(3)
A 		6
B 9.7
(3)
A 		8.3
(1.9)
A 		2.3
(-3)
A 		6.2
(0.2)
A 		7
C 5.4
(-0.7)
A 		4
(-1.8)
A 		2.5
(-3)
A 		10.1
(3)
A 		8
avr 5.9
(0.5) 		5.8
(0.4) 		2.6
(-3) 		8.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.7
(-2.1)
A 		2.1
(-3)
A 		2.9
(-2.8)
A 		3.3
(-2.7)
A 		3.1
(-2.8)
A 		26.9
(3)
A 		25
B 2.4
(-1.1)
A 		2.6
(-0.6)
A 		2.4
(-1.1)
A 		1.6
(-3)
A 		3.7
(2)
A 		4.1
(3)
A 		3
C 4
(-1.6)
A 		3.2
(-2.2)
A 		10.2
(3)
A 		9.6
(2.6)
A 		2.1
(-3)
A 		3.6
(-1.9)
A 		8
avr 4
(-2.1) 		2.6
(-3) 		5.2
(-1.2) 		4.8
(-1.5) 		3
(-2.7) 		11.5
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(-1.5)
A 		1.1
(1.5)
A 		0.8
(-3)
A 		1.2
(3)
A 		0
B 3.1
(3)
A 		2.1
(0.7)
A 		0.5
(-3)
A 		1.3
(-1.2)
A 		3
C 1.8
(3)
A 		1.2
(-1)
A 		0.9
(-3)
A 		1.7
(2.3)
A 		1
avr 1.9
(3) 		1.5
(1) 		0.7
(-3) 		1.4
(0.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1
(-2.6)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		0.9
(-2.7)
A 		6.6
(3)
A 		6
B 0.8
(-0.8)
A 		0.9
(-0.3)
A 		0.6
(-1.9)
A 		0.4
(-3)
A 		1.5
(3)
A 		1.5
(3)
A 		1
C 1.5
(-0.5)
A 		1
(-2.1)
A 		2.6
(3)
A 		1.9
(0.8)
A 		0.7
(-3)
A 		1.2
(-1.4)
A 		2
avr 1.1
(-2.5) 		0.9
(-3) 		1.3
(-1.9) 		1
(-2.7) 		1
(-2.7) 		3.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13969
Sequence Type Exemplar sequence
Representative Public ID F21D9.5 NCBI
Target Description F21D9.5 /REP_DB=WormBase Gene ID /WP=CE18631 /TR=Q9XV70 /GB=CAB04164.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075343 NCBI Caenorhabditis elegans F21D9.5 (F21D9.5) mRNA, complete cds. 11/11 None
SNAP00000022439 ENSEMBL cdna:SNAP chromosome:CEL140:V:19254813:19255627:1 11/11 None
GENEFINDER00000022448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19249968:19256098:1 11/11 None
F21D9.5 ENSEMBL cdna:known chromosome:CEL140:V:19249968:19255627:1 gene:F21D9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19249967-19255627(+) 99.13 100.0
Public Domain and Genome References
Gene Title
Ensembl F21D9.5
Entrez Gene 184775 Entrez gene
SwissProt Q9XV70 EMBL-EBI
WormBase CE18631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04164 Hypothetical protein F21D9.5 [Caenorhabditis elegans] ref|NP_507744.1| F21D9.5 [Caenorhabditis elegans] 0.0
blast CAB04164 Hypothetical protein F21D9.5 [Caenorhabditis elegans] ref|NP_507744.1| F21D9.5 [Caenorhabditis elegans] 1.0E-141
blast CAB03811 Hypothetical protein B0462.3 [Caenorhabditis elegans] ref|NP_507586.1| B0462.3 [Caenorhabditis elegans] 3.0E-26
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 3.0E-26
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 6.0E-26
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:177637_AT
gaatgatgtgctccgatatgggtcggctcacacagagcagctttggatcactatgcctct
ctcaaattggtctttccatcaaatttcatatcaacagtttcaaaaactttatataggaac
ttcgattcttaacctgaacgagctcttgaacttggacagtcatatcatttggctcggatc
ttccatctttggtggaaaagagttgaacttgttcataaaacattggatgatgggtcttac
cagtcaaaatgttaaatatatattcacatttctaagcaacggaatcactgatgagaaagc
tctatggaacggaattgaatatcagaaacagccagagtccactaagagaaccttcaagta
caccgaccctggttatacagttccgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGATGTGCTCCGATATGGGTCG 10 333 2031 Antisense
ATGGGTCGGCTCACACAGAGCAGCT 44 51 2048 Antisense
GAGCAGCTTTGGATCACTATGCCTC 496 389 2065 Antisense
ACTATGCCTCTCTCAAATTGGTCTT 427 101 2080 Antisense
TGGTCTTTCCATCAAATTTCATATC 230 553 2098 Antisense
GGAACTTCGATTCTTAACCTGAACG 498 529 2146 Antisense
GAACGAGCTCTTGAACTTGGACAGT 105 345 2166 Antisense
GGACAGTCATATCATTTGGCTCGGA 300 525 2184 Antisense
GCCAGAGTCCACTAAGAGAACCTTC 437 279 2361 Antisense
TCAAGTACACCGACCCTGGTTATAC 258 633 2384 Antisense
GACCCTGGTTATACAGTTCCGCAGA 308 381 2395 Antisense
Sequence Source Affymetrix Proprietary Database