[Home] | [Total List]

[177635_at]

Description T18D3.5 /REP_DB=WormBase Gene ID /WP=CE03666 /TR=Q22542 /GB=CAA92194.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 21      6grp_total > 32      4grp_total > 54      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 187.2
(3)
P 		159.7
(1.4)
A 		101.4
(-1.8)
A 		80.9
(-3)
A 		106
B 225.8
(3)
P 		144
(-0.3)
A 		148.5
(-0.2)
A 		78.9
(-3)
A 		147
C 233.6
(3)
P 		144.5
(-0.1)
A 		145.7
(-0.1)
A 		63.2
(-3)
A 		170
avr 215.5
(3) 		149.4
(0.2) 		131.9
(-0.6) 		74.3
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 246.3
(-0.4)
P 		349.8
(1.1)
P 		477.7
(3)
P 		232.9
(-0.6)
P 		136
(-2)
P 		67.2
(-3)
A 		411
B 369
(1.6)
P 		388.6
(1.9)
P 		448.8
(3)
P 		262.9
(-0.3)
P 		204.5
(-1.3)
P 		106.6
(-3)
P 		342
C 352
(2.6)
P 		371.8
(3)
P 		318
(1.9)
P 		302.1
(1.5)
P 		146
(-1.8)
P 		86.8
(-3)
P 		285
avr 322.4
(1.3) 		370.1
(2.2) 		414.8
(3) 		266
(0.3) 		162.2
(-1.6) 		86.9
(-3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 68.1
(3)
P 		34.7
(-0.6)
A 		26.5
(-1.4)
A 		11.8
(-3)
A 		56
B 72
(3)
P 		35.6
(-1)
A 		34.4
(-1.1)
A 		16.8
(-3)
A 		55
C 77.3
(3)
P 		41.5
(-0.2)
A 		50.8
(0.6)
A 		10.7
(-3)
A 		67
avr 72.5
(3) 		37.3
(-0.6) 		37.2
(-0.6) 		13.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 45.4
(-1.4)
P 		124.4
(3)
P 		104
(1.9)
P 		59.1
(-0.6)
P 		41
(-1.6)
P 		16.4
(-3)
A 		108
B 128.4
(2.9)
P 		129.3
(3)
P 		109
(1.6)
P 		69.6
(-1)
P 		83.1
(-0.1)
P 		39.8
(-3)
P 		90
C 130.5
(3)
P 		113.4
(2)
P 		80.9
(0.1)
P 		60.7
(-1.1)
P 		47.2
(-1.9)
P 		29.1
(-3)
P 		101
avr 101.4
(1.7) 		122.4
(3) 		98
(1.4) 		63.1
(-0.8) 		57.1
(-1.2) 		28.4
(-3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16627
Sequence Type Exemplar sequence
Representative Public ID T18D3.5 NCBI
Target Description T18D3.5 /REP_DB=WormBase Gene ID /WP=CE03666 /TR=Q22542 /GB=CAA92194.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077689 NCBI Caenorhabditis elegans T18D3.5 (T18D3.5) mRNA, complete cds. 11/11 None
SNAP00000005388 ENSEMBL cdna:SNAP chromosome:CEL140:X:12463739:12464298:1 11/11 None
GENEFINDER00000005397 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12463739:12464298:1 11/11 None
T18D3.5 ENSEMBL cdna:known chromosome:CEL140:X:12463739:12464298:1 gene:T18D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12463738-12464298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T18D3.5
Entrez Gene 188575 Entrez gene
SwissProt Q22542 EMBL-EBI
WormBase CE03666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92194 Hypothetical protein T18D3.5 [Caenorhabditis elegans] ref|NP_510090.1| T18D3.5 [Caenorhabditis elegans] 1.0E-63
blast CAE57244 Hypothetical protein CBG00122 [Caenorhabditis briggsae] 2.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510090.1 2 7-25,40-57
T18D3.5 2 7-25,40-57
SNAP00000005388 2 7-25,40-57
GENEFINDER00000005397 2 7-25,40-57
Sequence
Target Sequence 
>C. ELEGANS:177635_AT
aaattgtgcaattgtctcacctgcctgcttattataataatcctttcaattacactggct
aacgctcaagatgagcagcactcccctagagaaaacgaagcatctcgtgacaactccgac
gtttggctcgttgtaattctgtgtcttttattctgcttcgcattacgtcatatgaacgac
ttttacgtcggtgaatcggtcacgttggttgcagagggagaattttctcatcggttcagt
cgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGTGCAATTGTCTCACCTGCC 595 115 19 Antisense
TCTCACCTGCCTGCTTATTATAATA 429 613 33 Antisense
AATTACACTGGCTAACGCTCAAGAT 595 175 66 Antisense
AGCAGCACTCCCCTAGAGAAAACGA 11 77 92 Antisense
TCTCGTGACAACTCCGACGTTTGGC 518 611 121 Antisense
GTTTGGCTCGTTGTAATTCTGTGTC 65 451 139 Antisense
AATTCTGTGTCTTTTATTCTGCTTC 562 177 153 Antisense
TTCTGCTTCGCATTACGTCATATGA 87 695 169 Antisense
GACTTTTACGTCGGTGAATCGGTCA 522 319 196 Antisense
AATCGGTCACGTTGGTTGCAGAGGG 497 169 212 Antisense
GAATTTTCTCATCGGTTCAGTCGGA 436 325 238 Antisense
Sequence Source Affymetrix Proprietary Database