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[177634_at]

Description F08A8.5 /REP_DB=WormBase Gene ID /WP=CE17637 /TR=O62141 /GB=CAB16868.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 4.5
(-3)
A 		9.4
(-2.6)
A 		72.1
(3)
A 		9.6
(-2.5)
A 		68
B 73.8
(2.2)
A 		27.2
(-3)
A 		71.2
(1.9)
A 		80.9
(3)
A 		54
C 37.9
(-2.8)
A 		74.1
(3)
A 		36.7
(-3)
A 		63.8
(1.3)
A 		37
avr 38.7
(-2.5) 		36.9
(-3) 		60
(3) 		51.4
(0.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 4.1
(-2.8)
A 		2.6
(-3)
A 		7.5
(-2.3)
A 		45
(3)
A 		16.2
(-1.1)
A 		43.6
(2.8)
A 		42
B 36
(0.3)
A 		7.8
(-3)
A 		8.7
(-2.9)
A 		47.6
(1.6)
A 		55.5
(2.5)
A 		59.7
(3)
A 		52
C 39.4
(-0.8)
A 		61.7
(1)
A 		44.1
(-0.4)
A 		87.8
(3)
A 		31.9
(-1.4)
A 		11
(-3)
A 		77
avr 26.5
(-2) 		24
(-2.4) 		20.1
(-3) 		60.1
(3) 		34.5
(-0.8) 		38.1
(-0.3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.6
(-2.9)
A 		2.1
(-2.8)
A 		18.8
(3)
A 		1.4
(-3)
A 		17
B 23.5
(3)
A 		6.7
(-3)
A 		16.5
(0.5)
A 		17.2
(0.8)
A 		17
C 12.6
(-2)
A 		21.3
(3)
A 		12.8
(-1.9)
A 		10.8
(-3)
A 		11
avr 12.6
(-0.3) 		10
(-2.8) 		16
(3) 		9.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.9
(-2.9)
A 		1.6
(-2.5)
A 		11.4
(3)
A 		4.9
(-0.7)
A 		10.6
(2.5)
A 		11
B 12.5
(0.1)
A 		2.6
(-2.9)
A 		2.1
(-3)
A 		12.6
(0.1)
A 		22.5
(3)
A 		22.2
(2.9)
A 		20
C 14.6
(1.3)
A 		18.8
(3)
A 		11.2
(-0)
A 		17.7
(2.6)
A 		10.3
(-0.4)
A 		3.7
(-3)
A 		15
avr 9.3
(-0.1) 		7.4
(-1.4) 		5
(-3) 		13.9
(3) 		12.6
(2.1) 		12.2
(1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1393
Sequence Type Exemplar sequence
Representative Public ID F08A8.5 NCBI
Target Description F08A8.5 /REP_DB=WormBase Gene ID /WP=CE17637 /TR=O62141 /GB=CAB16868.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060864 NCBI Caenorhabditis elegans F08A8.5 (F08A8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000032490 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12962132:12965802:-1 9/11 None
F08A8.5 ENSEMBL cdna:known chromosome:CEL140:I:12963536:12966022:-1 gene:F08A8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12963466-12965953(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08A8.5
Entrez Gene 184168 Entrez gene
SwissProt O62141 EMBL-EBI
WormBase CE17637 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 0.0
blast CAA21488 Hypothetical protein T26H5.8 [Caenorhabditis elegans] emb|CAB04857.1| Hypothetical protein T26H5.8 [Caenorhabditis elegans] ref|NP_506839.1| T26H5.8 [Caenorhabditis elegans] 1.0E-117
blast CAA21488 Hypothetical protein T26H5.8 [Caenorhabditis elegans] emb|CAB04857.1| Hypothetical protein T26H5.8 [Caenorhabditis elegans] ref|NP_506839.1| T26H5.8 [Caenorhabditis elegans] 1.0E-101
blast CAE63474 Hypothetical protein CBG07941 [Caenorhabditis briggsae] 4.0E-96
blast CAB03434 Hypothetical protein T26E4.4 [Caenorhabditis elegans] ref|NP_506936.1| T26E4.4 [Caenorhabditis elegans] 1.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493265.1 1 7-29
F08A8.5 1 7-29
GENEFINDER00000032490 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:177634_AT
catcacattcgtcctcaagtgcgtgaatggttggctcccagcaaactacaagcgatgaga
gccgaaattctgctcccagcaaagtttagggatgattttctaatctgcacccacgtcaga
cggggagatttccagtatgatggacttcatcgaccatcggatgccacgtttacacgggcg
gccactgattttttggtggatttgtatcgaaaatctcatgaacgggtcaatgtggtggtt
ttaggcaatgatattcattttgcatatacggtttttgaagatcgtgttgcccatttcact
tttcttcaaaaaccagtcaacaattcttatgactacagtttaccacaaatttctccaagt
tatacggcaattctaacaccaacattgacaccagaaatcgacttggcattttctagacta
ttctgtgacgtcacactaataactgcgccatcttctacattcggatggtggttgtcgtac
ttggcaaaacgaactgcaactacatattatagggatattttggagtcaaaagatggggtt
gctggtgaaatgcacccggaagacttctacccgccggaatggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACATTCGTCCTCAAGTGCGTG 422 211 538 Antisense
TGGTTGGCTCCCAGCAAACTACAAG 514 543 565 Antisense
TGAGAGCCGAAATTCTGCTCCCAGC 37 569 593 Antisense
GGATGATTTTCTAATCTGCACCCAC 547 513 627 Antisense
TCTGCACCCACGTCAGACGGGGAGA 264 609 641 Antisense
TACACGGGCGGCCACTGATTTTTTG 28 643 708 Antisense
ATCGACTTGGCATTTTCTAGACTAT 152 37 934 Antisense
GACGTCACACTAATAACTGCGCCAT 106 379 964 Antisense
GATGGTGGTTGTCGTACTTGGCAAA 692 407 1001 Antisense
GAAATGCACCCGGAAGACTTCTACC 680 359 1084 Antisense
GACTTCTACCCGCCGGAATGGATAA 689 371 1099 Antisense
Sequence Source Affymetrix Proprietary Database