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[177633_at]

Description C33D3.4 /REP_DB=WormBase Gene ID /WP=CE02155 /TR=Q18370 /GB=CAA90028.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 2.5
(-3)
A 		3.1
(-2.7)
A 		3.6
(-2.4)
A 		14.4
(3)
A 		12
B 2.4
(-3)
A 		3.9
(-0.2)
A 		3.9
(-0.2)
A 		5.6
(3)
A 		3
C 2.4
(-3)
A 		17.1
(-1.7)
A 		6
(-2.7)
A 		69.5
(3)
A 		67
avr 2.4
(-3) 		8
(-1.8) 		4.5
(-2.5) 		29.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(-2)
A 		2.6
(-0.8)
A 		3.7
(1.1)
A 		1.3
(-3)
A 		3.3
(0.4)
A 		4.8
(3)
A 		4
B 3.5
(-1.5)
A 		10.6
(2.9)
A 		4.1
(-1.1)
A 		10.7
(3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		10
C 0.6
(-3)
A 		2.7
(0.1)
A 		4.7
(3)
A 		4
(2)
A 		2.4
(-0.4)
A 		1.6
(-1.5)
A 		4
avr 2
(-3) 		5.3
(3) 		4.2
(1) 		5.3
(3) 		2.3
(-2.5) 		2.5
(-2.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-2.1)
A 		0.7
(-3)
A 		1
(-1.7)
A 		2.1
(3)
A 		1
B 0.8
(-3)
A 		1
(0)
A 		0.9
(-1.5)
A 		1.2
(3)
A 		0
C 0.8
(-3)
A 		4.9
(-0.7)
A 		2.1
(-2.3)
A 		11.7
(3)
A 		11
avr 0.8
(-3) 		2.2
(-1) 		1.3
(-2.3) 		5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.4
(-2.3)
A 		0.9
(1)
A 		0.8
(0.3)
A 		0.3
(-3)
A 		1
(1.7)
A 		1.2
(3)
A 		1
B 1.2
(-1.5)
A 		3.5
(3)
A 		1
(-1.8)
A 		2.8
(1.6)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		3
C 0.2
(-3)
A 		0.8
(0.6)
A 		1.2
(3)
A 		0.8
(0.6)
A 		0.8
(0.6)
A 		0.5
(-1.2)
A 		1
avr 0.6
(-3) 		1.7
(3) 		1
(-0.8) 		1.3
(0.8) 		0.8
(-1.9) 		0.7
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177633_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17245
Sequence Type Exemplar sequence
Representative Public ID C33D3.4 NCBI
Target Description C33D3.4 /REP_DB=WormBase Gene ID /WP=CE02155 /TR=Q18370 /GB=CAA90028.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077356(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077356 NCBI Caenorhabditis elegans C33D3.4 (C33D3.4) mRNA, complete cds. 11/11 None
C33D3.4 ENSEMBL cdna:known chromosome:CEL140:X:10487817:10489689:1 gene:C33D3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027791 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10487816-10489689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D3.4
Entrez Gene 183157 Entrez gene
SwissProt Q18370 EMBL-EBI
WormBase CE02155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90028 Hypothetical protein C33D3.4 [Caenorhabditis elegans] ref|NP_509757.1| C33D3.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177633_AT
actgcaaatgcggtcttctgtacttttaacgcaacagaaaagataagatcggaaaacaaa
gatttttgcattccgcttattcagtggccaatacacattttcaccgggaccgtagaggta
ataatggactttgaagtcaaaacggaattggatctgaaaatgtttgaaaatcacagaaga
aaacgtcactaccataatgcgtttaaagaacttcaaattttaaacaagaaaaaaaggaag
caaaacagttcagcaaatgatctatttttaacacgtgtaaaaccacattcaacttttcaa
tggcaagtggattgtgggacttttgaaactgatgacttattacggactataatatccatg
cacgtaaaagacgtcaatcttcaagttttatatcacttcagtgtttcatattcaacatgt
ataatgctaagcattttagctcttacaggcggtaaagagaacaataacgaaatcgaaaaa
tttgatgcttattgtgacagttgtggaattgtagttatcaaagggttaagaaccgaccca
ttcacaaaacatcaagtatgcgcgtatgtaactctgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCAAATGCGGTCTTCTGTACTT 559 97 424 Antisense
GGTCTTCTGTACTTTTAACGCAACA 160 503 435 Antisense
TGCATTCCGCTTATTCAGTGGCCAA 149 579 490 Antisense
CCAATACACATTTTCACCGGGACCG 398 273 511 Antisense
GAAGAAAACGTCACTACCATAATGC 536 339 599 Antisense
GTAAAACCACATTCAACTTTTCAAT 434 461 700 Antisense
GAAACTGATGACTTATTACGGACTA 668 355 748 Antisense
ATCACTTCAGTGTTTCATATTCAAC 535 27 815 Antisense
GCATTTTAGCTCTTACAGGCGGTAA 242 307 854 Antisense
AAGAACCGACCCATTCACAAAACAT 21 153 951 Antisense
GTATGCGCGTATGTAACTCTGTTCA 120 453 979 Antisense
Sequence Source Affymetrix Proprietary Database