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[177632_at] 7TM receptor, srx family

Description F49C5.2 /REP_DB=WormBase Gene ID /WP=CE16079 /TR=O17877 /GB=CAB04431.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 03      6grp_cgc > 98      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 35.9
(-2.6)
A 		26.1
(-3)
A 		25.7
(-3)
A 		187.3
(3)
P 		162
B 71.4
(3)
A 		12
(-3)
A 		67.6
(2.6)
A 		48.2
(0.7)
A 		59
C 40.6
(-2.7)
A 		63.3
(-1.9)
A 		33.9
(-3)
A 		187.3
(3)
A 		153
avr 49.3
(-2.1) 		33.8
(-3) 		42.4
(-2.5) 		140.9
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 33.9
(-1.3)
A 		28.6
(-1.7)
A 		79.4
(2.3)
A 		45.4
(-0.4)
A 		88.2
(3)
A 		11.9
(-3)
A 		76
B 43
(0.5)
A 		16.5
(-3)
A 		25.9
(-1.7)
A 		49.5
(1.4)
A 		61.3
(3)
A 		18.2
(-2.8)
A 		45
C 11.8
(-3)
A 		84.9
(3)
A 		48
(-0)
A 		11.3
(-3)
A 		58.9
(0.9)
A 		32.2
(-1.3)
A 		74
avr 29.6
(-1.9) 		43.3
(-0.2) 		51.1
(0.7) 		35.4
(-1.2) 		69.5
(3) 		20.8
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 13.1
(-1)
A 		5.7
(-3)
A 		6.7
(-2.7)
A 		27.4
(3)
P 		22
B 22.8
(3)
A 		3
(-3)
A 		15.7
(0.8)
A 		10.3
(-0.8)
A 		20
C 13.4
(-2.5)
A 		18.2
(-1.1)
A 		11.8
(-3)
A 		31.6
(3)
A 		20
avr 16.4
(0.1) 		9
(-3) 		11.4
(-2) 		23.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.2
(-2.2)
A 		10.2
(-1.2)
A 		17.3
(0.6)
A 		11.5
(-0.8)
A 		26.6
(3)
A 		2.9
(-3)
A 		24
B 15
(-0.1)
A 		5.5
(-3)
A 		6.3
(-2.8)
A 		13.1
(-0.6)
A 		24.9
(3)
A 		6.8
(-2.6)
A 		19
C 4.4
(-2.5)
A 		25.9
(3)
A 		12.2
(-0.5)
A 		2.3
(-3)
A 		19.1
(1.3)
A 		10.8
(-0.8)
A 		24
avr 8.5
(-2.4) 		13.9
(-0.4) 		11.9
(-1.2) 		9
(-2.2) 		23.5
(3) 		6.8
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2698
Sequence Type Exemplar sequence
Representative Public ID F49C5.2 NCBI
Target Description F49C5.2 /REP_DB=WormBase Gene ID /WP=CE16079 /TR=O17877 /GB=CAB04431.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064276 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-120) (srx-120) mRNA, complete cds. 11/11 None
GENEFINDER00000035428 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12531161:12532880:1 11/11 None
F49C5.2 ENSEMBL cdna:known chromosome:CEL140:II:12531161:12532880:1 gene:F49C5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12531157-12532686(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-120
Ensembl F49C5.2
Entrez Gene 186013 Entrez gene
SwissProt O17877 EMBL-EBI
WormBase CE36304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04431 Hypothetical protein F49C5.2 [Caenorhabditis elegans] ref|NP_496677.2| Serpentine Receptor, class X family member (srx-120) [Caenorhabditis elegans] 0.0
blast AAF99934 Serpentine receptor, class x protein 122 [Caenorhabditis elegans] ref|NP_503912.2| Serpentine Receptor, class X family member (srx-122) [Caenorhabditis elegans] 1.0E-168
blast AAC27094 Serpentine receptor, class x protein 121 [Caenorhabditis elegans] ref|NP_503939.1| Serpentine Receptor, class X family member (srx-121) [Caenorhabditis elegans] 1.0E-156
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496677.2 7 26-48,55-77,92-114,135-157,185-207,233-255,265-287
F49C5.2 7 26-48,55-77,92-114,135-157,185-207,233-255,265-287
GENEFINDER00000035428 7 26-48,55-77,92-114,135-157,185-207,233-255,265-287
Sequence
Target Sequence 
>C. ELEGANS:177632_AT
gttggagcattggtccgttgtcacaaattttattggccactaaccgtataacagctgtct
attttccactttggcatatgaaaaagtatcgatttaaccctacaaattttggaatcggct
tctccctactgatcgcgttattttcatttgctgtgctgctaccagaaggttgtcactacc
tgttcaaccgtgactaccttggctggattggtgaagttacaccgtgcactgaagtggctc
aggaaatattttttataatcatgcttttcattactggtgcgacaactttttgcagtgttc
tgctctttatcaagttgattatgcactcgcccgatccccatgtttccaatgcacaactaa
cgtatcgacacaagaaaaatagaagaatgataattcaagcaattgtgcaaagtatcttaa
ttatcgttgactctctgaactctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAGCATTGGTCCGTTGTCACA 181 437 323 Antisense
ATTGGCCACTAACCGTATAACAGCT 69 3 354 Antisense
TAACAGCTGTCTATTTTCCACTTTG 595 639 371 Antisense
CAAATTTTGGAATCGGCTTCTCCCT 275 191 425 Antisense
TCCCTACTGATCGCGTTATTTTCAT 646 597 445 Antisense
TTCATTTGCTGTGCTGCTACCAGAA 563 689 465 Antisense
GGTTGTCACTACCTGTTCAACCGTG 361 505 490 Antisense
CATGCTTTTCATTACTGGTGCGACA 76 211 582 Antisense
TCAAGTTGATTATGCACTCGCCCGA 99 633 632 Antisense
TCCCCATGTTTCCAATGCACAACTA 501 595 657 Antisense
TTATCGTTGACTCTCTGAACTCTAC 183 681 743 Antisense
Sequence Source Affymetrix Proprietary Database