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[177631_at]

Description ZK596.3 /REP_DB=WormBase Gene ID /WP=CE06633 /TR=Q23547 /GB=CAA93432.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 32      6grp_highest_nonorm > 81      6grp_total > 31      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 65.3
(-2)
P 		356.6
(3)
P 		193.2
(0.2)
P 		7.2
(-3)
A 		349
B 84.3
(-1.5)
P 		326.6
(3)
P 		172.8
(0.1)
P 		5.4
(-3)
A 		321
C 60.8
(-2)
P 		248.3
(3)
P 		203.5
(1.8)
P 		21.4
(-3)
A 		227
avr 70.1
(-1.8) 		310.5
(3) 		189.8
(0.6) 		11.3
(-3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 263.9
(0.9)
P 		349.3
(3)
P 		330.8
(2.5)
P 		311.7
(2.1)
P 		230
(0.1)
P 		103.6
(-3)
P 		246
B 230.2
(1)
P 		304.1
(3)
P 		274.7
(2.2)
P 		262.2
(1.9)
P 		250.9
(1.5)
P 		84.4
(-3)
P 		220
C 219.4
(-0.1)
P 		356
(3)
P 		291.5
(1.5)
P 		344
(2.7)
P 		221.2
(-0)
P 		89.6
(-3)
P 		266
avr 237.8
(0.6) 		336.5
(3) 		299
(2.1) 		306
(2.3) 		234
(0.5) 		92.5
(-3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 23.8
(-1.2)
P 		77.4
(3)
P 		50.5
(0.9)
P 		1.1
(-3)
A 		76
B 26.9
(-1.1)
P 		80.7
(3)
P 		40
(-0.1)
P 		1.2
(-3)
A 		80
C 20.1
(-1.5)
P 		71.4
(3)
P 		70.9
(3)
P 		3.6
(-3)
A 		68
avr 23.6
(-1.3) 		76.5
(3) 		53.8
(1.2) 		2
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 48.6
(-1.6)
P 		124.2
(3)
P 		72
(-0.2)
P 		79.1
(0.3)
P 		69.4
(-0.3)
P 		25.2
(-3)
P 		99
B 80.1
(1.1)
P 		101.2
(2.9)
P 		66.7
(-0)
P 		69.4
(0.2)
P 		102
(3)
P 		31.5
(-3)
P 		71
C 81.3
(0.9)
P 		108.6
(3)
P 		74.2
(0.4)
P 		69.2
(-0)
P 		71.6
(0.2)
P 		30
(-3)
P 		79
avr 70
(-0) 		111.3
(3) 		71
(0.1) 		72.6
(0.2) 		81
(0.8) 		28.9
(-3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8939
Sequence Type Exemplar sequence
Representative Public ID ZK596.3 NCBI
Target Description ZK596.3 /REP_DB=WormBase Gene ID /WP=CE06633 /TR=Q23547 /GB=CAA93432.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069626 NCBI Caenorhabditis elegans ZK596.3 (ZK596.3) mRNA, complete cds. 11/11 None
SNAP00000015317 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10902053:10904327:-1 11/11 None
GENEFINDER00000015320 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10902053:10904327:-1 11/11 None
ZK596.3 ENSEMBL cdna:known chromosome:CEL140:IV:10902053:10904327:-1 gene:ZK596.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10902058-10904333(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK596.3
Entrez Gene 191357 Entrez gene
SwissProt Q23547 EMBL-EBI
WormBase CE35705 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93432 Hypothetical protein ZK596.3 [Caenorhabditis elegans] ref|NP_502027.2| ZK596.3 [Caenorhabditis elegans] 0.0
blast CAE61955 Hypothetical protein CBG05954 [Caenorhabditis briggsae] 1.0E-149
blast NP_504549 M03F8.1 [Caenorhabditis elegans] gb|AAB65908.1| Hypothetical protein M03F8.1 [Caenorhabditis elegans] 5.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502027.2 6 21-40,136-158,170-192,202-224,231-250,265-287
ZK596.3 6 21-40,136-158,170-192,202-224,231-250,265-287
SNAP00000015317 6 21-40,136-158,170-192,202-224,231-250,265-287
GENEFINDER00000015320 6 21-40,136-158,170-192,202-224,231-250,265-287
Sequence
Target Sequence 
>C. ELEGANS:177631_AT
tatagtacaggtcttcttccgatctgccgttcttctgtcgatgacacacgcgctgttcca
atgtatgctaattaattttgtctcaatggcaaaccattctccaactcttgagagaattat
tggatttccacttgtcacagtggagaccgtgcacaatctttgcctttatgtgatcagtgc
tttgcaatacgaacaagattcacatttaatgcagtatacccgaatggccatgattctact
cactatttctacggttctcaaattaatatttgttgctataattcaaacaaatcacctatt
acaagttgcatgtgttattcttgcgtcgggagttatattgtctcataacaccgcactgga
agattttgattcatttttggtagacacacattgtgactcaatgggtaaggatgtacaaca
tatcaaatgttttgatttaaaaatatttttggcatctcttccatcagttgcattctctca
attaatatattttcttgcgtttttcacaactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGTACAGGTCTTCTTCCGATCT 196 661 405 Antisense
TGCCGTTCTTCTGTCGATGACACAC 504 585 429 Antisense
ACGCGCTGTTCCAATGTATGCTAAT 188 91 452 Antisense
GCAAACCATTCTCCAACTCTTGAGA 194 319 493 Antisense
AGACCGTGCACAATCTTTGCCTTTA 93 71 548 Antisense
GCAGTATACCCGAATGGCCATGATT 251 311 615 Antisense
TCTACTCACTATTTCTACGGTTCTC 108 615 639 Antisense
ATGTGTTATTCTTGCGTCGGGAGTT 256 49 714 Antisense
TATTGTCTCATAACACCGCACTGGA 694 663 740 Antisense
TCCATCAGTTGCATTCTCTCAATTA 414 591 864 Antisense
TTTTCTTGCGTTTTTCACAACTGGA 331 677 894 Antisense
Sequence Source Affymetrix Proprietary Database