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[177630_at]

Description F56H6.2 /REP_DB=WormBase Gene ID /WP=CE16130 /TR=O45580 /GB=CAB04491.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 38.5
(-2.4)
A 		33.9
(-3)
A 		71.7
(1.8)
A 		81.3
(3)
A 		47
B 36.9
(-3)
A 		46.2
(-1.7)
A 		72.3
(1.8)
P 		81.3
(3)
M 		44
C 54.5
(-1.9)
A 		72.8
(1.8)
M 		49
(-3)
A 		78.8
(3)
P 		30
avr 43.3
(-3) 		51
(-1.8) 		64.3
(0.4) 		80.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 94
(3)
P 		35.7
(-2.1)
A 		35.6
(-2.1)
A 		42.4
(-1.5)
A 		72.9
(1.1)
P 		25.8
(-3)
A 		68
B 33.4
(-3)
A 		54.1
(2.6)
A 		39.4
(-1.4)
A 		55.6
(3)
P 		46.1
(0.4)
M 		37
(-2)
P 		22
C 36
(-2.5)
A 		78.7
(1.7)
A 		30.6
(-3)
A 		91.4
(3)
P 		36.8
(-2.4)
P 		34.1
(-2.7)
A 		61
avr 54.5
(1.3) 		56.2
(1.7) 		35.2
(-2.4) 		63.1
(3) 		51.9
(0.8) 		32.3
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14
(0.5)
A 		7.4
(-3)
A 		18.7
(3)
A 		11.9
(-0.6)
A 		11
B 11.8
(-2.6)
A 		11.4
(-3)
A 		16.8
(2.5)
P 		17.3
(3)
M 		6
C 18
(0.7)
A 		20.9
(3)
M 		17.1
(0)
A 		13.3
(-3)
P 		8
avr 14.6
(-1) 		13.2
(-3) 		17.5
(3) 		14.2
(-1.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 17.3
(1.2)
P 		12.7
(-0.6)
A 		7.7
(-2.5)
A 		10.8
(-1.3)
A 		22
(3)
P 		6.3
(-3)
A 		16
B 11.6
(-1.7)
A 		18
(2.5)
A 		9.6
(-3)
A 		14.7
(0.4)
P 		18.7
(3)
M 		13.8
(-0.2)
P 		9
C 13.4
(-0.9)
A 		24
(3)
A 		7.8
(-3)
A 		18.4
(0.9)
P 		11.9
(-1.5)
P 		11.4
(-1.7)
A 		16
avr 14.1
(0.5) 		18.2
(3) 		8.4
(-3) 		14.6
(0.8) 		17.5
(2.6) 		10.5
(-1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177630_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1360
Sequence Type Exemplar sequence
Representative Public ID F56H6.2 NCBI
Target Description F56H6.2 /REP_DB=WormBase Gene ID /WP=CE16130 /TR=O45580 /GB=CAB04491.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060702
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F56H6.2 ENSEMBL cdna:known chromosome:CEL140:I:12295321:12297429:1 gene:F56H6.2 None
GENEFINDER00000044671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12289343:12300334:1 None
NM_060702 NCBI Caenorhabditis elegans F56H6.2 (F56H6.2) mRNA, complete cds. None
SNAP00000044651 ENSEMBL cdna:SNAP chromosome:CEL140:I:12295354:12297429:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12295251-12297360(+) 97.26 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H6.2
Entrez Gene 186413 Entrez gene
SwissProt O45580 EMBL-EBI
WormBase CE28567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04491 Hypothetical protein F56H6.2 [Caenorhabditis elegans] ref|NP_493103.1| F56H6.2 [Caenorhabditis elegans] 0.0
blast CAB04490 Hypothetical protein F56H6.1 [Caenorhabditis elegans] ref|NP_493101.1| F56H6.1 [Caenorhabditis elegans] 0.0
blast CAB04492 Hypothetical protein F56H6.4 [Caenorhabditis elegans] ref|NP_493105.1| F56H6.4 [Caenorhabditis elegans] 1.0E-176
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 1.0E-124
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 1.0E-121
blast CAE71909 Hypothetical protein CBG18971 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 9.0E-124
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493103.1 1 13-32
F56H6.2 1 13-32
GENEFINDER00000044671 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:177630_AT
attcagagtcagctaccgtaatcctacagtatccctatagtacccgattaatttcagtgt
ccctatatcacgctatggatcatcaccgcctggatggctccagtggacttgtagttggga
gcatgaagccttgggtggaggttatggctctgcgacatggagccaagaagattctaacag
tagagtacaacacgctgacgatcccaacagagttccaagatcgcctctcatcgattttac
caatggattttgtgaatgattgggagaagtacgctgggacatttgattttgcggcttcat
tcagttccctagaacattctggattgggaagatatggggatcctctagacccgattggtg
acttgagggagatgctcaaaattaaatgcatgctgaataaagggggaatcctgttcctcg
gcttgccactcggaatcgatgcgatccagtacaatgctcatcggatctatggctcggttc
gtcttgcgctgatgttctacggctttgaatggctcggcacgtactctggtggtcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAGAGTCAGCTACCGTAATCCT 366 11 557 Antisense
CCTACAGTATCCCTATAGTACCCGA 171 267 579 Antisense
GTACCCGATTAATTTCAGTGTCCCT 556 457 596 Antisense
CAGTGTCCCTATATCACGCTATGGA 590 207 611 Antisense
ACACGCTGACGATCCCAACAGAGTT 3 111 746 Antisense
AAGATCGCCTCTCATCGATTTTACC 443 155 773 Antisense
TGATTTTGCGGCTTCATTCAGTTCC 37 565 840 Antisense
GATCCTCTAGACCCGATTGGTGACT 541 415 895 Antisense
GCTTGCCACTCGGAATCGATGCGAT 700 305 977 Antisense
TCTACGGCTTTGAATGGCTCGGCAC 101 613 1052 Antisense
TCGGCACGTACTCTGGTGGTCAAGA 96 605 1070 Antisense
Sequence Source Affymetrix Proprietary Database