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[177629_at]

Description ZK593.3 /REP_DB=WormBase Gene ID /WP=CE06624 /TR=Q23537 /GB=CAA93422.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 35      6grp_total > 81      4grp_total > 40      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1541
1 2 3 4 range
A 586
(-3)
P 		1814.1
(1.9)
P 		2101.1
(3)
P 		1215.5
(-0.5)
P 		1515
B 603.7
(-3)
P 		1827
(3)
P 		1780.4
(2.8)
P 		1343.7
(0.6)
P 		1223
C 645.9
(-3)
P 		1795.7
(1.7)
P 		2126.9
(3)
P 		1077.9
(-1.2)
P 		1481
avr 611.9
(-3) 		1812.3
(2.2) 		2002.8
(3) 		1212.4
(-0.4) 		1391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3904
1 2 3 4 5 6 range
A 1750.5
(-2.2)
P 		1556.2
(-2.5)
P 		3636.8
(0.7)
P 		5165.8
(3)
P 		3854.2
(1)
P 		1261.9
(-3)
P 		3904
B 1440.3
(-2.8)
P 		1660.4
(-2.5)
P 		2655.6
(-0.7)
P 		4832.6
(3)
P 		3811.1
(1.2)
P 		1345.1
(-3)
P 		3488
C 1365.7
(-3)
P 		2040
(-1.9)
P 		3273.1
(0.1)
P 		5100.6
(3)
P 		3119.6
(-0.2)
P 		1681.2
(-2.5)
P 		3735
avr 1518.8
(-2.9) 		1752.2
(-2.5) 		3188.5
(-0.1) 		5033
(3) 		3595
(0.6) 		1429.4
(-3) 		3604
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 563
1 2 3 4 range
A 213.3
(-2.4)
P 		393.8
(0.5)
P 		549.3
(3)
P 		177.9
(-3)
P 		371
B 192.5
(-3)
P 		451.2
(3)
P 		412.5
(2.1)
P 		286.3
(-0.8)
P 		259
C 213.8
(-2.7)
P 		516.3
(0.6)
P 		741.3
(3)
P 		181.8
(-3)
P 		560
avr 206.5
(-3) 		453.8
(1.1) 		567.7
(3) 		215.3
(-2.9) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1241
1 2 3 4 5 6 range
A 322.7
(-2.9)
P 		553.5
(-1.5)
P 		792
(-0.1)
P 		1310.2
(3)
P 		1163
(2.1)
P 		307.2
(-3)
P 		1003
B 501.2
(-3)
P 		552.7
(-2.7)
P 		644.9
(-2.2)
P 		1280
(1.5)
P 		1548.4
(3)
P 		501.6
(-3)
P 		1047
C 506.2
(-3)
P 		622.5
(-1.7)
P 		833.1
(0.8)
P 		1025.7
(3)
P 		1009.5
(2.8)
P 		562.8
(-2.3)
P 		520
avr 443.4
(-3) 		576.2
(-2) 		756.7
(-0.6) 		1205.3
(2.7) 		1240.3
(3) 		457.2
(-2.9) 		797
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9705
Sequence Type Exemplar sequence
Representative Public ID ZK593.3 NCBI
Target Description ZK593.3 /REP_DB=WormBase Gene ID /WP=CE06624 /TR=Q23537 /GB=CAA93422.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069630(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069630 NCBI Caenorhabditis elegans ZK593.3 (ZK593.3) mRNA, complete cds. 11/11 None
SNAP00000042093 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10916585:10917535:1 11/11 None
GENEFINDER00000042108 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10916585:10917535:1 11/11 None
ZK593.3 ENSEMBL cdna:known chromosome:CEL140:IV:10916585:10917535:1 gene:ZK593.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10916590-10917541(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK593.3
Entrez Gene 191355 Entrez gene
SwissProt Q23537 EMBL-EBI
WormBase CE06624 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93422 Hypothetical protein ZK593.3 [Caenorhabditis elegans] ref|NP_502031.1| ZK593.3 [Caenorhabditis elegans] 1.0E-79
blast CAE61958 Hypothetical protein CBG05958 [Caenorhabditis briggsae] 9.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502031.1 2 57-79,94-116
ZK593.3 2 57-79,94-116
SNAP00000042093 2 57-79,94-116
GENEFINDER00000042108 2 57-79,94-116
Sequence
Target Sequence 
>C. ELEGANS:177629_AT
gttatgctcccaacagctcgaaaaccaactgaacataaaactccatcagctattgatcaa
aattggccgtgttttatcgttgcattcacaatggcatcaatcaagcttttgctctcatat
actggaacagaagacttcagaattgttggattcaatgatgtcaacgtattcttcctcatg
gaacttggctcaactccacttgcagtcataaatccacgtgtctggtttggaatgtttatg
tgttctctttcatacatgtctgtggagactggatatccaactgtcgctattgtcactatt
gtttcaatgctcattattgcctacgcaatggagtatgtcgattatagaaagaagcaagaa
actgagagaaccgctgtctaccaaattcttccacttgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGCTCCCAACAGCTCGAAAAC 670 445 22 Antisense
TTGGCCGTGTTTTATCGTTGCATTC 386 705 84 Antisense
AAGCTTTTGCTCTCATATACTGGAA 89 151 124 Antisense
AATGATGTCAACGTATTCTTCCTCA 440 165 175 Antisense
TTCCTCATGGAACTTGGCTCAACTC 200 701 193 Antisense
TCCACTTGCAGTCATAAATCCACGT 672 587 216 Antisense
GTGTTCTCTTTCATACATGTCTGTG 624 485 261 Antisense
GATATCCAACTGTCGCTATTGTCAC 105 427 293 Antisense
CAATGCTCATTATTGCCTACGCAAT 343 181 326 Antisense
AACTGAGAGAACCGCTGTCTACCAA 341 141 381 Antisense
TCTACCAAATTCTTCCACTTGTCGA 77 613 398 Antisense
Sequence Source Affymetrix Proprietary Database