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[177627_at]

Description F10A3.1 /REP_DB=WormBase Gene ID /WP=CE15768 /TR=O45334 /GB=CAB07339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 33.7
(0.8)
A 		18.8
(-3)
A 		42.2
(3)
A 		21.7
(-2.3)
A 		23
B 31.4
(1.5)
A 		21.1
(-3)
A 		34.9
(3)
A 		21.2
(-3)
A 		14
C 17.9
(-2.1)
A 		10
(-3)
A 		48
(1.2)
A 		64
(3)
P 		54
avr 27.7
(-0.3) 		16.6
(-3) 		41.7
(3) 		35.6
(1.5) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.6
(3)
A 		16.9
(-1.4)
A 		32.7
(0.6)
A 		47
(2.4)
A 		14.4
(-1.7)
A 		4.2
(-3)
A 		47
B 38.4
(1.1)
A 		54.2
(3)
A 		5.4
(-3)
A 		26.9
(-0.4)
A 		32.6
(0.3)
A 		18.6
(-1.4)
A 		49
C 25.2
(-0.2)
A 		45.3
(3)
A 		7.8
(-3)
A 		9.6
(-2.7)
A 		10.7
(-2.5)
A 		29.6
(0.5)
A 		38
avr 38.4
(2.9) 		38.8
(3) 		15.3
(-3) 		27.8
(0.2) 		19.2
(-2) 		17.5
(-2.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.3
(3)
A 		4.1
(-2.4)
A 		11
(2.1)
A 		3.2
(-3)
A 		9
B 10
(3)
A 		5.2
(-2.2)
A 		8.1
(0.9)
A 		4.5
(-3)
A 		6
C 5.9
(-1.7)
A 		2.9
(-3)
A 		16.7
(3)
A 		10.8
(0.4)
P 		14
avr 9.4
(1.1) 		4.1
(-3) 		11.9
(3) 		6.2
(-1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.5
(1.7)
A 		6
(-0.2)
A 		7.1
(0.4)
A 		11.9
(3)
A 		4.3
(-1.2)
A 		1
(-3)
A 		11
B 13.3
(1.3)
A 		18
(3)
A 		1.3
(-3)
A 		7.1
(-0.9)
A 		13.2
(1.3)
A 		6.9
(-1)
A 		17
C 9.3
(0.7)
A 		13.8
(3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		3.5
(-2.2)
A 		9.9
(1)
A 		12
avr 10.7
(1.7) 		12.6
(3) 		3.5
(-3) 		7
(-0.7) 		7
(-0.7) 		5.9
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13677
Sequence Type Exemplar sequence
Representative Public ID F10A3.1 NCBI
Target Description F10A3.1 /REP_DB=WormBase Gene ID /WP=CE15768 /TR=O45334 /GB=CAB07339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074663 NCBI Caenorhabditis elegans F10A3.1 (F10A3.1) mRNA, complete cds. 11/11 None
SNAP00000000090 ENSEMBL cdna:SNAP chromosome:CEL140:V:16142981:16143747:-1 11/11 None
GENEFINDER00000000105 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16142981:16143747:-1 11/11 None
F10A3.1 ENSEMBL cdna:known chromosome:CEL140:V:16142981:16143747:-1 gene:F10A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16142980-16143747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10A3.1
Entrez Gene 184272 Entrez gene
SwissProt O45334 EMBL-EBI
WormBase CE15768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07339 Hypothetical protein F10A3.1 [Caenorhabditis elegans] ref|NP_507064.1| F10A3.1 [Caenorhabditis elegans] 2.0E-80
blast CAB05514 Hypothetical protein F44G3.10 [Caenorhabditis elegans] ref|NP_507063.1| F44G3.10 [Caenorhabditis elegans] 5.0E-51
blast CAA20971 Hypothetical protein F49H6.13 [Caenorhabditis elegans] emb|CAB04448.1| Hypothetical protein F49H6.13 [Caenorhabditis elegans] ref|NP_507304.1| F49H6.13 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR009545 EMBL-EBI Protein of unknown function DUF1164 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507064.1 4 7-29,49-71,92-114,134-156
F10A3.1 4 7-29,49-71,92-114,134-156
SNAP00000000090 4 7-29,49-71,92-114,134-156
GENEFINDER00000000105 4 7-29,49-71,92-114,134-156
Sequence
Target Sequence 
>C. ELEGANS:177627_AT
caagcggcttttcctcaatattgtcgtatgcattggtattgtctgtaatttctttggcgt
tttctcacaagcttggataacggattatggaggaagcattggaattgttccattttattc
gactgaagttggatggtatgccttagcaagttggatgatgtacatttccgtcgcctgtca
tcttctggtcacaattttgctcacattagtattccgagatgtccgaagaaacggatattg
ccactaccagcgttcacaattttttctcattgcattcttctcactgatggtcactattct
gacagtaactgctgtgattttgattggagtcaatttgccaaatctaaactataattataa
cgataatgcaacattgggatactctgcatgggtcagtgttgcagctgctgtttgctattt
catcgccgctggattagctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCGGCTTTTCCTCAATATTGTC 117 187 24 Antisense
GTCTGTAATTTCTTTGGCGTTTTCT 677 471 64 Antisense
TGGCGTTTTCTCACAAGCTTGGATA 2 543 78 Antisense
TGGATGATGTACATTTCCGTCGCCT 692 549 175 Antisense
TCATCTTCTGGTCACAATTTTGCTC 585 619 201 Antisense
AATTTTGCTCACATTAGTATTCCGA 165 175 216 Antisense
GAAACGGATATTGCCACTACCAGCG 535 355 251 Antisense
TGCATTCTTCTCACTGATGGTCACT 337 579 294 Antisense
ATGGGTCAGTGTTGCAGCTGCTGTT 23 51 411 Antisense
AGCTGCTGTTTGCTATTTCATCGCC 147 81 426 Antisense
ATTTCATCGCCGCTGGATTAGCTCT 226 15 440 Antisense
Sequence Source Affymetrix Proprietary Database