[Home] | [Total List]

[177626_at] G-protein coupled receptor, srh family

Description F55C5.9 /REP_DB=WormBase Gene ID /WP=CE11166 /TR=Q20814 /GB=CAB01574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 16      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 3
(-3)
A 		3.9
(-2.3)
A 		10.2
(3)
A 		8.5
(1.6)
A 		7
B 3.5
(1.6)
A 		1.8
(-3)
A 		4
(3)
A 		2.6
(-0.8)
A 		2
C 1.5
(-3)
A 		7.4
(-1.2)
A 		2.8
(-2.6)
A 		20.9
(3)
A 		19
avr 2.7
(-3) 		4.4
(-1.7) 		5.7
(-0.8) 		10.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.8
(-2.3)
A 		3.7
(-2.6)
A 		37.3
(3)
A 		1.6
(-3)
A 		2.4
(-2.9)
A 		10.1
(-1.6)
A 		36
B 4.6
(-1)
A 		7.7
(3)
A 		7
(2.1)
A 		3
(-3)
A 		3
(-3)
A 		3.1
(-2.9)
A 		5
C 4.6
(0.1)
A 		7.2
(3)
A 		1.9
(-2.9)
A 		4.5
(-0)
A 		1.8
(-3)
A 		3.9
(-0.7)
A 		5
avr 5
(-1.8) 		6.2
(-1.2) 		15.4
(3) 		3
(-2.7) 		2.4
(-3) 		5.7
(-1.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-2.1)
A 		0.8
(-3)
A 		2.7
(3)
A 		1.2
(-1.7)
A 		2
B 1.1
(3)
A 		0.4
(-3)
A 		0.9
(1.3)
A 		0.6
(-1.3)
A 		1
C 0.5
(-3)
A 		2.1
(0.2)
A 		1
(-2)
A 		3.5
(3)
A 		3
avr 0.9
(-3) 		1.1
(-1.7) 		1.5
(1) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		1.3
(-2.3)
A 		8.1
(3)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		2.5
(-1.4)
A 		8
B 1.6
(-0.3)
A 		2.6
(3)
A 		1.7
(-0)
A 		0.8
(-3)
A 		1.2
(-1.7)
A 		1.2
(-1.7)
A 		2
C 1.7
(1.2)
A 		2.2
(3)
A 		0.5
(-3)
A 		0.9
(-1.6)
A 		0.6
(-2.6)
A 		1.3
(-0.2)
A 		2
avr 1.5
(-1.2) 		2
(-0.1) 		3.4
(3) 		0.7
(-3) 		0.8
(-2.8) 		1.7
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12652
Sequence Type Exemplar sequence
Representative Public ID F55C5.9 NCBI
Target Description F55C5.9 /REP_DB=WormBase Gene ID /WP=CE11166 /TR=Q20814 /GB=CAB01574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073683 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-16) (srh-16) mRNA, complete cds. 11/11 None
GENEFINDER00000005359 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12294802:12296390:1 11/11 None
F55C5.9 ENSEMBL cdna:known chromosome:CEL140:V:12294802:12296390:1 gene:F55C5.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005353 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12294801-12296390(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-16
Ensembl F55C5.9
Entrez Gene 186287 Entrez gene
SwissProt Q20814 EMBL-EBI
WormBase CE33111 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01574 Hypothetical protein F55C5.9 [Caenorhabditis elegans] ref|NP_506084.2| Serpentine Receptor, class H family member (srh-16) [Caenorhabditis elegans] 0.0
blast CAB01574 Hypothetical protein F55C5.9 [Caenorhabditis elegans] ref|NP_506084.2| Serpentine Receptor, class H family member (srh-16) [Caenorhabditis elegans] 1.0E-106
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 2.0E-77
blast CAB02854 Hypothetical protein C50B6.5 [Caenorhabditis elegans] ref|NP_506301.1| Serpentine Receptor, class H family member (srh-18) [Caenorhabditis elegans] 1.0E-75
blast AAC24174 Serpentine receptor, class h protein 21 [Caenorhabditis elegans] ref|NP_504325.1| Serpentine Receptor, class H family member (srh-21) [Caenorhabditis elegans] 3.0E-39
blast CAE62621 Hypothetical protein CBG06743 [Caenorhabditis briggsae] 1.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506084.2 7 20-37,50-72,95-117,137-159,200-222,243-265,270-292
F55C5.9 7 20-37,50-72,95-117,137-159,200-222,243-265,270-292
GENEFINDER00000005359 6 20-37,50-72,95-117,137-159,174-196,201-223
Sequence
Target Sequence 
>C. ELEGANS:177626_AT
ataaatgtgctcaccgagtttcatagctgctttctcatgcttccagttgttcatctaccg
tacccattactacgtgcaactggaattctcgcagaatttggatttagtggcttattcttg
ttttatgtcctatctgcatttattatacaaacttcattttcaattatcgagatgttctat
ttccgatacaaagctagcgtttttgactatcaaagccgaaacttcacaaaattcgtaaag
ctattcatatattcatttcgtgttttaacgattctctttcctggaatcacattcggaaca
tttttctatagtattgaacgacaagaagaatacaaaaaagagcttgcaatgacattcgtt
cacggattcatgttgggaatacctaatattctgttcgtttacacaatattttttggggct
catcttgaagttgcggcatacgcagcattcatgtgtctgacttttcatggctttctatca
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAATGTGCTCACCGAGTTTCATA 50 25 181 Antisense
GTTTCATAGCTGCTTTCTCATGCTT 85 451 198 Antisense
TCTCATGCTTCCAGTTGTTCATCTA 382 613 213 Antisense
TCTACCGTACCCATTACTACGTGCA 328 615 234 Antisense
TACGTGCAACTGGAATTCTCGCAGA 292 647 251 Antisense
TATTCTTGTTTTATGTCCTATCTGC 62 665 293 Antisense
GTGTTTTAACGATTCTCTTTCCTGG 265 483 440 Antisense
ATTCGTTCACGGATTCATGTTGGGA 207 9 534 Antisense
TGGGGCTCATCTTGAAGTTGCGGCA 252 553 594 Antisense
TGCGGCATACGCAGCATTCATGTGT 535 581 612 Antisense
GACTTTTCATGGCTTTCTATCAACA 667 371 639 Antisense
Sequence Source Affymetrix Proprietary Database