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[177625_at]

Description T01C1.2 /REP_DB=WormBase Gene ID /WP=CE03593 /TR=Q22052 /GB=CAA92010.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 84.6
(3)
P 		56
(-0.4)
A 		34.2
(-3)
A 		57.5
(-0.2)
A 		50
B 97.1
(3)
P 		9.2
(-3)
A 		11.5
(-2.8)
A 		72.7
(1.3)
A 		88
C 142.7
(3)
P 		51.2
(-3)
A 		53.7
(-2.8)
A 		53.3
(-2.9)
A 		92
avr 108.1
(3) 		38.8
(-2.5) 		33.1
(-3) 		61.2
(-0.8) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 8.8
(-3)
A 		71.8
(3)
A 		26.6
(-1.3)
A 		16.1
(-2.3)
A 		47.7
(0.7)
A 		8.6
(-3)
A 		63
B 78.6
(3)
P 		63
(1.7)
A 		27
(-1.1)
A 		35.8
(-0.4)
A 		60.5
(1.5)
A 		3.8
(-3)
A 		75
C 49.1
(3)
A 		46.4
(2.7)
A 		46.6
(2.7)
A 		11.3
(-1.9)
A 		31.4
(0.7)
A 		2.4
(-3)
A 		47
avr 45.5
(1.4) 		60.4
(3) 		33.4
(0.1) 		21.1
(-1.2) 		46.5
(1.5) 		4.9
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 30.8
(3)
P 		12.1
(-2)
A 		8.9
(-2.9)
A 		8.4
(-3)
A 		22
B 31
(3)
P 		2.3
(-3)
A 		2.7
(-2.9)
A 		15.5
(-0.2)
A 		29
C 47.2
(3)
P 		14.7
(-2.1)
A 		18.7
(-1.5)
A 		9
(-3)
A 		38
avr 36.3
(3) 		9.7
(-3) 		10.1
(-2.9) 		11
(-2.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.6
(-3)
A 		25.6
(3)
A 		5.8
(-2)
A 		4.1
(-2.4)
A 		14.4
(0.2)
A 		2.1
(-2.9)
A 		24
B 27.4
(3)
P 		21
(1.5)
A 		6.6
(-1.8)
A 		9.5
(-1.1)
A 		24.6
(2.4)
A 		1.4
(-3)
A 		26
C 18.2
(3)
A 		14.1
(1.6)
A 		11.9
(0.8)
A 		2.3
(-2.5)
A 		10.2
(0.2)
A 		0.8
(-3)
A 		17
avr 15.7
(1.6) 		20.2
(3) 		8.1
(-0.9) 		5.3
(-1.8) 		16.4
(1.8) 		1.4
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16672
Sequence Type Exemplar sequence
Representative Public ID T01C1.2 NCBI
Target Description T01C1.2 /REP_DB=WormBase Gene ID /WP=CE03593 /TR=Q22052 /GB=CAA92010.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077393 NCBI Caenorhabditis elegans T01C1.2 (T01C1.2) mRNA, complete cds. 11/11 None
SNAP00000031609 ENSEMBL cdna:SNAP chromosome:CEL140:X:10719691:10721498:-1 10/11 None
GENEFINDER00000031614 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10719691:10721971:-1 11/11 None
T01C1.2 ENSEMBL cdna:known chromosome:CEL140:X:10720823:10721971:-1 gene:T01C1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031610 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10720822-10721971(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C1.2
Entrez Gene 187937 Entrez gene
SwissProt Q22052 EMBL-EBI
WormBase CE03593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92010 Hypothetical protein T01C1.2 [Caenorhabditis elegans] dbj|BAE45265.1| MBlk-1 Related factor-1 [Caenorhabditis elegans] 0.0
blast CAE60821 Hypothetical protein CBG04528 [Caenorhabditis briggsae] 1.0E-161
blast CAE60821 Hypothetical protein CBG04528 [Caenorhabditis briggsae] 1.0E-144
blast NP_509794 T01C1.2 [Caenorhabditis elegans] 1.0E-107
blast CAA92010 Hypothetical protein T01C1.2 [Caenorhabditis elegans] dbj|BAE45265.1| MBlk-1 Related factor-1 [Caenorhabditis elegans] 1.0E-96
blast NP_509794 T01C1.2 [Caenorhabditis elegans] 4.0E-96
blast NP_509793 T01C1.3 [Caenorhabditis elegans] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 2.8E-7
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 7.5E-15
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 1.1E-11
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 7.5E-15
Sequence
Target Sequence 
>C. ELEGANS:177625_AT
aaaccaggacttgcgatgtcttcccattttatgggaacggataatcaggaccagtacaaa
ggaacctacgccatgaataggctgagcattgccaatcttttaaactcaccatcgtcaaca
ttaccaactggaaatgattttcaaaactttggattggaacgacaaatcaacgagggtgta
ctgccacaattattgcaaaacccgtgggctatcaatttctggctccaatttcaaaacgca
caacttcaacctcatttgcaatacgcggctttggcttgcagtcttgtcacggaaaatcct
ctggatttgagtaataagacaatgaatatgctccagaaaattggagttttcaacagcgtg
acgaaaagtgaagatgatgaatcggttgcaccagaaaaaccagtagatgaatcgttaaac
aaatcgaatattttgaggagaaactacactgtggaggatttgacccaagcagtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCAGGACTTGCGATGTCTTCCC 306 125 28 Antisense
ATAGGCTGAGCATTGCCAATCTTTT 49 23 104 Antisense
GCCAATCTTTTAAACTCACCATCGT 81 279 118 Antisense
TCACCATCGTCAACATTACCAACTG 691 625 133 Antisense
GAGGGTGTACTGCCACAATTATTGC 642 401 199 Antisense
AATTATTGCAAAACCCGTGGGCTAT 501 173 215 Antisense
GTGGGCTATCAATTTCTGGCTCCAA 323 489 231 Antisense
AAACGCACAACTTCAACCTCATTTG 209 127 261 Antisense
CAACCTCATTTGCAATACGCGGCTT 367 187 274 Antisense
TGGCTTGCAGTCTTGTCACGGAAAA 465 545 299 Antisense
GTGGAGGATTTGACCCAAGCAGTGG 604 489 478 Antisense
Sequence Source Affymetrix Proprietary Database