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[177624_at]

Description D1054.3 /REP_DB=WormBase Gene ID /WP=CE05522 /TR=Q18949 /GB=CAA98442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 77      6grp_total > 74      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2663
1 2 3 4 range
A 720.8
(-3)
P 		1028.2
(-2.2)
P 		957.7
(-2.4)
P 		2996.3
(3)
P 		2276
B 793.7
(-3)
P 		980.7
(-2.6)
P 		894.2
(-2.8)
P 		3383.9
(3)
P 		2590
C 869.1
(-3)
P 		986.6
(-2.7)
P 		1104.9
(-2.4)
P 		3262
(3)
P 		2393
avr 794.5
(-3) 		998.5
(-2.5) 		985.6
(-2.5) 		3214.1
(3) 		2420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 836
1 2 3 4 5 6 range
A 1161.4
(-3)
P 		1188.4
(-2.6)
P 		1607.1
(3)
P 		1533.4
(2)
P 		1236.9
(-2)
P 		1260.7
(-1.7)
P 		446
B 1018.1
(-3)
P 		1160.4
(-1.4)
P 		1538.7
(3)
P 		1410.5
(1.5)
P 		1416.4
(1.6)
P 		1444.5
(1.9)
P 		521
C 1154.8
(-3)
P 		1201.1
(-2.6)
P 		1256.6
(-2.1)
P 		1551.6
(0.4)
P 		1286
(-1.9)
P 		1854.3
(3)
P 		700
avr 1111.4
(-3) 		1183.3
(-1.9) 		1467.5
(2.2) 		1498.5
(2.7) 		1313.1
(-0) 		1519.8
(3) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 262.4
(-1.9)
P 		223.2
(-3)
P 		250.4
(-2.2)
P 		438.6
(3)
P 		215
B 253.1
(-2.5)
P 		242.2
(-2.6)
P 		207.2
(-3)
P 		721.1
(3)
P 		514
C 287.7
(-2.9)
P 		283.7
(-3)
P 		385.1
(-0.7)
P 		550
(3)
P 		266
avr 267.7
(-2.7) 		249.7
(-3) 		280.9
(-2.4) 		569.9
(3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 214.1
(-3)
P 		422.7
(3)
P 		350
(0.9)
P 		388.9
(2)
P 		373.3
(1.6)
P 		306.9
(-0.3)
P 		209
B 354.3
(-3)
P 		386.2
(-2.1)
P 		373.6
(-2.5)
P 		373.6
(-2.5)
P 		575.5
(3)
P 		538.6
(2)
P 		221
C 428
(-0.7)
P 		366.5
(-1.9)
P 		319.8
(-2.8)
P 		312
(-3)
P 		416.1
(-1)
P 		620.7
(3)
P 		309
avr 332.1
(-3) 		391.8
(-0.7) 		347.8
(-2.4) 		358.2
(-2) 		455
(1.7) 		488.7
(3) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14068
Sequence Type Exemplar sequence
Representative Public ID D1054.3 NCBI
Target Description D1054.3 /REP_DB=WormBase Gene ID /WP=CE05522 /TR=Q18949 /GB=CAA98442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073350 NCBI Caenorhabditis elegans D1054.3 (D1054.3) mRNA, complete cds. 11/11 None
SNAP00000017214 ENSEMBL cdna:SNAP chromosome:CEL140:V:10774049:10775361:1 11/11 None
GENEFINDER00000017238 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10773918:10775361:1 11/11 None
D1054.3.1 ENSEMBL cdna:known chromosome:CEL140:V:10774035:10775418:1 gene:D1054.3 11/11 None
D1054.3.2 ENSEMBL cdna:known chromosome:CEL140:V:10774037:10775401:1 gene:D1054.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10774048-10775361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1054.3
Entrez Gene 179494 Entrez gene
SwissProt Q18949 EMBL-EBI
WormBase CE05522 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13138_AT phosphatase-related at
ATH1-121501:254918_AT phosphatase-related at
CANINE:1592888_AT similar to suppressor of G2 allele of SKP1 cfa
CANINE_2:CFA.10099.1.S1_AT similar to suppressor of G2 allele of SKP1 cfa
CANINE_2:CFAAFFX.6478.1.S1_S_AT similar to suppressor of G2 allele of SKP1 cfa
DROSOPHILA_2:1629285_AT dm
DROSGENOME1:149482_AT dm
CHICKEN:GGA.5492.2.S1_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) gga
CHICKEN:GGAAFFX.12809.1.S1_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) gga
HG-U133_PLUS_2:224309_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133B:224309_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HU35KSUBA:R84594_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HU35KSUBD:RC_AA416876_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133B:223330_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133_PLUS_2:223330_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
U133_X3P:G7643785_3P_A_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
U133_X3P:G12654186_3P_A_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
U133_X3P:HS.307127.0.S1_3P_X_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
U133_X3P:HS.307127.0.S1_3P_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133_PLUS_2:223329_X_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133B:223329_X_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133_PLUS_2:234686_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U133B:234686_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HG-U95B:53020_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
HU35KSUBD:RC_R85481_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) hs
MU11KSUBA:AA222031_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MG-U74AV2:93366_R_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MG-U74AV2:93365_S_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOE430A:1426424_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOUSE430A_2:1426424_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOUSE430_2:1426424_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOE430A:1426425_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOUSE430A_2:1426425_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MOUSE430_2:1426425_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) mm
MG-U74BV2:110972_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA mm
MOE430B:1446757_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA mm
MOUSE430_2:1446757_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA mm
MU19KSUBA:TC23947_I_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA mm
MU19KSUBC:TC37176_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (Sugt1), mRNA mm
RG-U34B:RC_AA901343_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI136494_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (predicted) rn
RG-U34C:RC_AI101283_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (predicted) rn
RAE230B:1383364_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (predicted) rn
RAT230_2:1383364_AT SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA98442 Hypothetical protein D1054.3 [Caenorhabditis elegans] ref|NP_505751.1| D1054.3 [Caenorhabditis elegans] 1.0E-111
blast CAE64888 Hypothetical protein CBG09701 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR007699 EMBL-EBI SGS 7.1E-55
Pfam IPR007052 EMBL-EBI CS domain 1.5E-7
Pfam IPR007699 EMBL-EBI SGS 7.1E-55
Pfam IPR007052 EMBL-EBI CS domain 1.5E-7
Sequence
Target Sequence 
>C. ELEGANS:177624_AT
aactgatgtcactttaactatcctaaaacgcggagtgcctctcgatgattgctctgtttc
tctatcagataacaacacactgacggtcaagcaatgtgatgagattctcttctatggaca
attatctggtcaagtgaaaaaagatgatcttactgtaaaatgcactgccgccaaggtaga
agttcgacttccgaaattcgctcgcaatgaacgatgggcttctctgctgaaagacggaca
aggtgttgccgcttctgtacagagtgtatcaccaaatccagaaagtgcaccaactactac
tgtgaaaaagaattgggatgctatcgagaaacaagctgtaaaagaagaggaagatgaatc
gctggaaggtgatgccgctgtaaacaaaatgttccgtaagatgtacaacgacgcttcgga
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGATGTCACTTTAACTATCCTA 193 143 51 Antisense
TCCTAAAACGCGGAGTGCCTCTCGA 519 543 71 Antisense
TCTCGATGATTGCTCTGTTTCTCTA 691 609 90 Antisense
GATAACAACACACTGACGGTCAAGC 469 423 118 Antisense
GATGAGATTCTCTTCTATGGACAAT 255 411 148 Antisense
AAATGCACTGCCGCCAAGGTAGAAG 22 119 208 Antisense
AGTTCGACTTCCGAAATTCGCTCGC 300 63 231 Antisense
CGATGGGCTTCTCTGCTGAAAGACG 505 249 262 Antisense
AAGACGGACAAGGTGTTGCCGCTTC 705 153 281 Antisense
GTTGCCGCTTCTGTACAGAGTGTAT 145 441 295 Antisense
AGATGTACAACGACGCTTCGGATGA 660 65 449 Antisense
Sequence Source Affymetrix Proprietary Database