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[177623_at]

Description T01B7.2 /REP_DB=WormBase Gene ID /WP=CE03586 /TR=Q22044 /GB=CAA91295.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 26      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 23.1
(-1)
A 		22.9
(-1)
A 		7.1
(-3)
A 		54.3
(3)
P 		47
B 31.4
(0.3)
M 		40.4
(2)
P 		46.2
(3)
A 		13
(-3)
A 		33
C 11.3
(-3)
A 		44.2
(1.1)
A 		17.7
(-2.2)
A 		59.8
(3)
A 		49
avr 21.9
(-3) 		35.8
(1.1) 		23.7
(-2.5) 		42.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 30.7
(0.5)
A 		6.2
(-3)
A 		48.7
(3)
P 		31.6
(0.6)
A 		34.4
(1)
A 		37.1
(1.4)
A 		43
B 29.8
(1.6)
A 		15.2
(-3)
A 		16.8
(-2.5)
A 		27
(0.7)
A 		34.1
(3)
A 		28.8
(1.3)
M 		19
C 27.5
(-0.3)
A 		44.2
(3)
A 		16.7
(-2.5)
A 		23.9
(-1)
A 		14
(-3)
A 		26.1
(-0.6)
A 		30
avr 29.3
(2) 		21.9
(-3) 		27.4
(0.8) 		27.5
(0.8) 		27.5
(0.8) 		30.7
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.4
(3)
A 		5
(-0.1)
A 		1.8
(-3)
A 		8
(2.6)
P 		7
B 10
(2.5)
M 		10
(2.5)
P 		10.7
(3)
A 		2.8
(-3)
A 		8
C 3.8
(-3)
A 		12.7
(3)
A 		6.2
(-1.4)
A 		10.1
(1.2)
A 		9
avr 7.4
(-0.6) 		9.2
(3) 		6.2
(-3) 		7
(-1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.7
(-0.5)
A 		2.2
(-3)
A 		10.6
(3)
P 		8
(1.1)
A 		10.4
(2.9)
A 		9
(1.9)
A 		8
B 10.4
(0.9)
A 		5.1
(-2.4)
A 		4.1
(-3)
A 		7.2
(-1.1)
A 		13.9
(3)
A 		10.7
(1)
M 		10
C 10.2
(0.8)
A 		13.5
(3)
A 		4.3
(-3)
A 		4.8
(-2.7)
A 		4.5
(-2.9)
A 		8.7
(-0.1)
A 		9
avr 8.8
(1.5) 		6.9
(-1.9) 		6.3
(-3) 		6.7
(-2.3) 		9.6
(3) 		9.5
(2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3218
Sequence Type Exemplar sequence
Representative Public ID T01B7.2 NCBI
Target Description T01B7.2 /REP_DB=WormBase Gene ID /WP=CE03586 /TR=Q22044 /GB=CAA91295.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T01B7.2 ENSEMBL cdna:pseudogene chromosome:CEL140:II:8711991:8713335:-1 gene:T01B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8712326-8713332(-) 100.0 100.0
Public Domain and Genome References
Ensembl T01B7.2
Sequence
Target Sequence 
>C. ELEGANS:177623_AT
ttttgtgaatgcctcctatcttggagttggagttttcctacatatcttgatattaagagt
tttattattcaaagaaaggcagatattccgcaataactcgttttttcaaatatatgtgat
ggattcgattgcaagcacatttcttcttctaactgatatgtttttcgttcgattattcat
gtatgtacctcccctttgtgctataattagtccttttttctgggatccttccataacaac
aaagtttgtaatattagttgttatgttaccttttattggtacttggaatgtcataatctc
aagagtttttgttttcccgtctgatggtggatttgcgatgaattatatcagaaatgtaga
atgggcagttttatctcttttccaatcaattttcatatttactgcattaggatttacgat
agtttgtacatcaatcactttatatggattatttgttctaccagacagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTGAATGCCTCCTATCTTGGA 309 677 84 Antisense
GGAGTTTTCCTACATATCTTGATAT 347 517 112 Antisense
TATTCCGCAATAACTCGTTTTTTCA 60 663 167 Antisense
AGCACATTTCTTCTTCTAACTGATA 440 77 217 Antisense
GATTATTCATGTATGTACCTCCCCT 599 429 254 Antisense
GCTATAATTAGTCCTTTTTTCTGGG 410 303 283 Antisense
TTTTCTGGGATCCTTCCATAACAAC 596 673 299 Antisense
TCAAGAGTTTTTGTTTTCCCGTCTG 575 611 382 Antisense
TTTCCCGTCTGATGGTGGATTTGCG 610 667 396 Antisense
AGTTTTATCTCTTTTCCAATCAATT 55 63 450 Antisense
GGATTATTTGTTCTACCAGACAGGA 337 507 529 Antisense
Sequence Source Affymetrix Proprietary Database