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[177621_at] 7TM receptor, sre family

Description F28H7.9 /REP_DB=WormBase Gene ID /WP=CE05758 /TR=Q19897 /GB=CAA96640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 92      4grp_total > 20      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 93.5
(-1.4)
P 		107.4
(-0.5)
P 		67.9
(-3)
A 		161.9
(3)
P 		94
B 74
(-1)
A 		102.4
(0.9)
P 		44.8
(-3)
A 		132.3
(3)
P 		88
C 115.9
(-0)
P 		83.4
(-1.6)
P 		53.9
(-3)
P 		179.5
(3)
P 		126
avr 94.5
(-0.7) 		97.7
(-0.5) 		55.5
(-3) 		157.9
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 104.4
(-0.8)
P 		111.9
(0.1)
P 		118.2
(0.8)
P 		118.1
(0.8)
P 		136.8
(3)
P 		86.1
(-3)
A 		51
B 144.1
(3)
P 		137.3
(2.5)
P 		123.8
(1.5)
P 		106.9
(0.3)
P 		139.9
(2.7)
P 		60.2
(-3)
M 		84
C 117.3
(0.3)
P 		146
(1.8)
P 		125.6
(0.7)
P 		169
(3)
M 		130.4
(1)
P 		53.7
(-3)
A 		115
avr 121.9
(1.8) 		131.7
(2.7) 		122.5
(1.9) 		131.3
(2.6) 		135.7
(3) 		66.7
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 34
(3)
P 		23.3
(-1)
P 		17.8
(-3)
A 		23.7
(-0.8)
P 		16
B 23.6
(1.4)
A 		25.3
(2)
P 		10.4
(-3)
A 		28.2
(3)
P 		18
C 38.4
(3)
P 		24
(-1.4)
P 		18.8
(-3)
P 		30.3
(0.5)
P 		20
avr 32
(3) 		24.2
(0.1) 		15.7
(-3) 		27.4
(1.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 19.2
(-3)
P 		39.8
(2.6)
P 		25.7
(-1.2)
P 		29.9
(-0.1)
P 		41.3
(3)
P 		21
(-2.5)
A 		22
B 50.1
(1.8)
P 		45.7
(1.1)
P 		30.1
(-1.7)
P 		28.3
(-2)
P 		56.9
(3)
P 		22.4
(-3)
M 		35
C 43.5
(2.8)
P 		44.6
(3)
P 		32
(0.2)
P 		34
(0.6)
M 		42.2
(2.5)
P 		18
(-3)
A 		27
avr 37.6
(0.9) 		43.4
(2.2) 		29.3
(-1) 		30.7
(-0.7) 		46.8
(3) 		20.5
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177621_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13639
Sequence Type Exemplar sequence
Representative Public ID F28H7.9 NCBI
Target Description F28H7.9 /REP_DB=WormBase Gene ID /WP=CE05758 /TR=Q19897 /GB=CAA96640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073346(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073346 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-6) (sre-6) mRNA, complete cds. 10/11 None
GENEFINDER00000038700 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10763676:10765375:-1 11/11 None
F28H7.9 ENSEMBL cdna:known chromosome:CEL140:V:10763243:10765375:-1 gene:F28H7.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038696 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10763675-10765375(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-6
Ensembl F28H7.9
Entrez Gene 185100 Entrez gene
SwissProt Q19897 EMBL-EBI
WormBase CE37901 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96640 Hypothetical protein F28H7.9 [Caenorhabditis elegans] ref|NP_505747.2| Serpentine Receptor, class E (epsilon) family member (sre-6) [Caenorhabditis elegans] sp|Q19897|SRE6_CAEEL Serpentine receptor class epsilon-6 (Protein sre-6) 0.0
blast CAA96640 Hypothetical protein F28H7.9 [Caenorhabditis elegans] ref|NP_505747.2| Serpentine Receptor, class E (epsilon) family member (sre-6) [Caenorhabditis elegans] sp|Q19897|SRE6_CAEEL Serpentine receptor class epsilon-6 (Protein sre-6) 1.0E-171
blast CAE64884 Hypothetical protein CBG09696 [Caenorhabditis briggsae] 1.0E-170
blast CAE64884 Hypothetical protein CBG09696 [Caenorhabditis briggsae] 1.0E-146
blast CAB01220 Hypothetical protein K02E11.2 [Caenorhabditis elegans] ref|NP_506522.1| Serpentine Receptor, class E (epsilon) family member (sre-7) [Caenorhabditis elegans] 6.0E-65
blast CAE60997 Hypothetical protein CBG04734 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.9E-27
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.5E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505747.2 7 30-52,65-87,102-124,144-166,171-193,234-251,266-288
F28H7.9 7 30-52,65-87,102-124,144-166,171-193,234-251,266-288
GENEFINDER00000038700 7 30-52,65-87,102-124,144-166,171-193,234-251,266-288
Sequence
Target Sequence 
>C. ELEGANS:177621_AT
tcatgatgcccgtttgtgtattttcagcagtggcatacattaataattggttctccatat
acacccatggcattttgctaattgtgctcaatatcggtggctcactacttcttattattg
tgacaaaatgcaatattcgtcttcataactcatactctacacttgaacatcacggtcttt
attcattgagtgaacggtttcaagtgtcagaaaatataaaaacatgtcagtggttatcca
ggattcaaggttccattctctttttcaacgtcgcgtgtgtatctctgttagttcttgaaa
acgtttcaatgaacgataaaatggttattgtatcaaacgtgtcattcaacattttatgca
caatatacgctgcagtgactccaataattgtaataatttacacacctgaatggaccagag
agacaataagattggtaagggttatacaaaatacatcgtacaagaaaagaaaatcatttc
accctcatacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGATGCCCGTTTGTGTATTTTC 107 623 470 Antisense
AATTGGTTCTCCATATACACCCATG 649 177 514 Antisense
ATATCGGTGGCTCACTACTTCTTAT 35 21 560 Antisense
TTCGTCTTCATAACTCATACTCTAC 695 695 605 Antisense
CATACTCTACACTTGAACATCACGG 337 211 620 Antisense
GAACATCACGGTCTTTATTCATTGA 544 349 634 Antisense
GATTCAAGGTTCCATTCTCTTTTTC 174 431 711 Antisense
TTCTCTTTTTCAACGTCGCGTGTGT 257 691 725 Antisense
TCGCGTGTGTATCTCTGTTAGTTCT 137 601 740 Antisense
CAATATACGCTGCAGTGACTCCAAT 658 179 830 Antisense
GAAAATCATTTCACCCTCATACTTC 615 353 938 Antisense
Sequence Source Affymetrix Proprietary Database