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[177620_s_at]

Description T24D1.3 /REP_DB=WormBase Gene ID /WP=CE14166 /TR=O02333 /GB=CAB03425.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 41      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 30.2
(-3)
A 		93.2
(0.8)
A 		130
(3)
A 		45.9
(-2.1)
A 		100
B 28.9
(-2.1)
A 		81.5
(1.5)
A 		103.2
(3)
A 		15.4
(-3)
A 		88
C 38.1
(-3)
A 		84
(-0.7)
A 		47.8
(-2.5)
A 		160.2
(3)
A 		122
avr 32.4
(-3) 		86.2
(2.3) 		93.7
(3) 		73.8
(1.1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1645
1 2 3 4 5 6 range
A 78.8
(-2.9)
A 		64.3
(-3)
A 		82.6
(-2.9)
A 		182.6
(-2.5)
A 		1093.3
(1.2)
P 		1523.4
(3)
P 		1459
B 74.7
(-3)
A 		88.5
(-2.9)
A 		76.3
(-3)
A 		159.2
(-2.7)
A 		874.9
(0)
P 		1663.7
(3)
P 		1589
C 19
(-3)
A 		46.6
(-2.9)
A 		111.5
(-2.6)
A 		153.7
(-2.4)
A 		792.9
(0.2)
P 		1463.3
(3)
P 		1444
avr 57.5
(-3) 		66.5
(-3) 		90.1
(-2.9) 		165.2
(-2.6) 		920.4
(0.5) 		1550.1
(3) 		1493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 11
(-2.1)
A 		20.2
(-0)
A 		34
(3)
A 		6.7
(-3)
A 		27
B 9.2
(-1.3)
A 		20.1
(1.9)
A 		23.9
(3)
A 		3.3
(-3)
A 		21
C 12.6
(-3)
A 		24.2
(1.8)
A 		16.7
(-1.3)
A 		27
(3)
A 		14
avr 10.9
(-3) 		21.5
(1.5) 		24.9
(3) 		12.3
(-2.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 14.5
(-3)
A 		22.9
(-2.9)
A 		18
(-2.9)
A 		46.3
(-2.5)
A 		329.9
(2.3)
P 		370.9
(3)
P 		356
B 26
(-2.9)
A 		29.5
(-2.9)
A 		18.5
(-3)
A 		42.2
(-2.8)
A 		355.5
(0.4)
P 		620.4
(3)
P 		602
C 7
(-3)
A 		14.2
(-2.9)
A 		28.4
(-2.7)
A 		30.9
(-2.7)
A 		256.6
(0.1)
P 		489.9
(3)
P 		483
avr 15.8
(-3) 		22.2
(-2.9) 		21.6
(-2.9) 		39.8
(-2.7) 		314
(0.7) 		493.7
(3) 		478
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177620_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.631
Sequence Type Exemplar sequence
Representative Public ID T24D1.3 NCBI
Target Description T24D1.3 /REP_DB=WormBase Gene ID /WP=CE14166 /TR=O02333 /GB=CAB03425.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060232 NCBI Caenorhabditis elegans T24D1.3 (T24D1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000027671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9961684:9968205:-1 11/11 None
SNAP00000027668 ENSEMBL cdna:SNAP chromosome:CEL140:I:9964367:9968205:-1 11/11 None
T24D1.3 ENSEMBL cdna:known chromosome:CEL140:I:9966927:9968276:-1 gene:T24D1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9966992-9968136(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D1.3
Entrez Gene 172854 Entrez gene
SwissProt O02333 EMBL-EBI
WormBase CE14166 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03423 Hypothetical protein T24D1.2 [Caenorhabditis elegans] ref|NP_492631.1| T24D1.2 [Caenorhabditis elegans] 1.0E-166
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 1.0E-143
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 1.0E-136
blast CAB03425 Hypothetical protein T24D1.3 [Caenorhabditis elegans] ref|NP_492633.1| T24D1.3 [Caenorhabditis elegans] 1.0E-131
blast CAB03425 Hypothetical protein T24D1.3 [Caenorhabditis elegans] ref|NP_492633.1| T24D1.3 [Caenorhabditis elegans] 1.0E-130
blast CAE60252 Hypothetical protein CBG03826 [Caenorhabditis briggsae] 7.0E-25
blast CAB05629 Hypothetical protein T23F6.3 [Caenorhabditis elegans] ref|NP_502431.2| T23F6.3 [Caenorhabditis elegans] 1.0E-22
Sequence
Target Sequence 
>C. ELEGANS:177620_S_AT
tcacccacatcgccagagattacgattttttctacaggattgttgggcttgagacgtcgg
agttctgcaagaatctcaatcagaatgtcagcgactgctcaaaccaatctaccgattaca
ccgattcgtagaagaaggggtcgagcagtttctcccatccttgaaatcgagtttgaaaac
ctttcaagtagcagtagtggaaccagcggtgactcgggaaatcattcgtcaccaacgaac
actaacgatcaatcatttattggcgatgatgcgagaacatatgaccaggagcacgttccc
atagactttgaagggccgagcacatctaccggaatcacagatcgacatcccagacgacgc
aatcaagacggctcccacggagagtgtacaatgtgcttcgaggttccggtttcgccgctt
ggatgcaacaattgtctacagattattggatgtgaagaatgtgtcgatatttggtatcgc
agttcgtccaaaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCCACATCGCCAGAGATTACGA 305 627 448 Antisense
GGCTTGAGACGTCGGAGTTCTGCAA 14 537 493 Antisense
GTCAGCGACTGCTCAAACCAATCTA 133 465 534 Antisense
GTTTCTCCCATCCTTGAAATCGAGT 68 451 595 Antisense
GGAACCAGCGGTGACTCGGGAAATC 421 529 646 Antisense
ATATGACCAGGAGCACGTTCCCATA 626 21 726 Antisense
GCCGAGCACATCTACCGGAATCACA 69 285 762 Antisense
ATCACAGATCGACATCCCAGACGAC 420 27 781 Antisense
CAGACGACGCAATCAAGACGGCTCC 356 205 798 Antisense
ACAATGTGCTTCGAGGTTCCGGTTT 189 115 835 Antisense
TGGTATCGCAGTTCGTCCAAACCAT 680 551 919 Antisense
Sequence Source Affymetrix Proprietary Database