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[177619_at]

Description F58D5.8 /REP_DB=WormBase Gene ID /WP=CE25920 /TR=Q9NLC8 /GB=CAC15866.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.6
(-3)
A 		7
(0)
A 		11.4
(3)
A 		4.2
(-1.9)
A 		9
B 3.5
(-2.6)
A 		7.3
(3)
A 		6.7
(2.1)
A 		3.2
(-3)
A 		4
C 2.4
(-1.6)
A 		1.8
(-3)
A 		4.4
(3)
A 		1.9
(-2.8)
A 		3
avr 2.8
(-3) 		5.4
(0.3) 		7.5
(3) 		3.1
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.7
(-1.2)
A 		2
(-3)
A 		7.7
(-0.8)
A 		8.6
(-0.4)
A 		17.4
(3)
A 		6.3
(-1.3)
A 		15
B 3.6
(-3)
A 		3.7
(-2.9)
A 		3.4
(-3)
A 		7.2
(-2.3)
A 		36.1
(3)
A 		22.4
(0.5)
A 		33
C 3.4
(-3)
A 		6.3
(-2.3)
A 		8.6
(-1.8)
A 		29.8
(3)
A 		5.6
(-2.5)
A 		15.1
(-0.3)
A 		26
avr 4.6
(-2.8) 		4
(-3) 		6.6
(-2) 		15.2
(1.3) 		19.7
(3) 		14.6
(1.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 0.9
(-2.3)
A 		1.5
(-0.8)
A 		3
(3)
A 		0.6
(-3)
A 		2
B 1.1
(-0.8)
A 		1.8
(3)
A 		1.6
(1.9)
A 		0.7
(-3)
A 		1
C 0.8
(-0.5)
A 		0.5
(-2)
A 		1.5
(3)
A 		0.3
(-3)
A 		1
avr 0.9
(-1.4) 		1.3
(0.2) 		2
(3) 		0.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.2
(-2.3)
A 		0.7
(-3)
A 		1.7
(-1.7)
A 		2.2
(-1)
A 		5.3
(3)
A 		1.5
(-2)
A 		5
B 1.2
(-2.8)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		1.9
(-2.5)
A 		14.7
(3)
A 		8.4
(0.3)
A 		14
C 1.3
(-3)
A 		1.9
(-2.2)
A 		2.2
(-1.9)
A 		6
(3)
A 		1.8
(-2.4)
A 		5
(1.7)
A 		5
avr 1.2
(-3) 		1.3
(-2.9) 		1.6
(-2.6) 		3.4
(-0.8) 		7.3
(3) 		5
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.404
Sequence Type Exemplar sequence
Representative Public ID F58D5.8 NCBI
Target Description F58D5.8 /REP_DB=WormBase Gene ID /WP=CE25920 /TR=Q9NLC8 /GB=CAC15866.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060642 NCBI Caenorhabditis elegans F58D5.8 (F58D5.8) mRNA, complete cds. 11/11 None
F58D5.8 ENSEMBL cdna:known chromosome:CEL140:I:12038124:12039884:-1 gene:F58D5.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034696 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034705 7/11 Cross Hyb Matching Probes None
SNAP00000000691 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000694 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12038054-12039815(-) 97.47 100.0
Public Domain and Genome References
Gene Title
Ensembl F58D5.8
Entrez Gene 186501 Entrez gene
SwissProt Q9NLC8 EMBL-EBI
WormBase CE25920 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70241 Hypothetical protein F58D5.8 [Caenorhabditis elegans] emb|CAC15866.1| Hypothetical protein F58D5.8 [Caenorhabditis elegans] ref|NP_493043.1| F58D5.8 [Caenorhabditis elegans] 1.0E-136
blast CAE71800 Hypothetical protein CBG18811 [Caenorhabditis briggsae] 6.0E-30
blast AAB37558 Hypothetical protein C09B9.2 [Caenorhabditis elegans] ref|NP_500707.1| C09B9.2 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493043.1 3 78-100,107-129,170-192
F58D5.8 3 78-100,107-129,170-192
Sequence
Target Sequence 
>C. ELEGANS:177619_AT
tccagttccttgataatgctctacgctatcaagaaccctggagcctcctgtatacttctt
gctagtcaatatattgcaatgtattactgtttttcgaaccatctacaatctacaaattcg
tatgattctcagagaccaattttcgaacggattatgtctctatcagttatcagtttggta
tcatttgctattcatttcttcatccttattcaatcgattcgaattactggagcatcggaa
aaacggagtgattatagcgataaagttattgtggaaggatgggagaagcggaagaaagag
ttggataagctgatttgcaatttgatcaatgaaatttgtggaggagatgaggatcgctat
ctaaacattcaaatcgctgatgaaactaccgatcttccggtttccatcgacagagccaat
gttgatatgagaatttaccgagcttttgaaatgagcatggagaaggatatcataagcctg
tcaactagtaatacatctcatgcagagatcagtactccgaagagccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGTTCCTTGATAATGCTCTACG 45 591 370 Antisense
ATGCTCTACGCTATCAAGAACCCTG 521 41 385 Antisense
TCAAGAACCCTGGAGCCTCCTGTAT 5 631 398 Antisense
AGCCTCCTGTATACTTCTTGCTAGT 113 83 411 Antisense
GTTTTTCGAACCATCTACAATCTAC 299 449 458 Antisense
GAACGGATTATGTCTCTATCAGTTA 138 349 514 Antisense
CTATTCATTTCTTCATCCTTATTCA 125 225 557 Antisense
GATGAAACTACCGATCTTCCGGTTT 315 409 748 Antisense
CGGTTTCCATCGACAGAGCCAATGT 664 243 767 Antisense
GGATATCATAAGCCTGTCAACTAGT 598 509 834 Antisense
AGAGATCAGTACTCCGAAGAGCCGG 558 67 873 Antisense
Sequence Source Affymetrix Proprietary Database